Mercurial > repos > iuc > hyphy_busted
comparison hyphy_busted.xml @ 35:e908c4003bd8 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954
| author | iuc |
|---|---|
| date | Thu, 02 Mar 2023 15:18:01 +0000 |
| parents | e931e69b5a80 |
| children |
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| 34:caf23deba39a | 35:e908c4003bd8 |
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| 1 <?xml version="1.0"?> | 1 <tool id="hyphy_busted" name="HyPhy-BUSTED" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
| 2 <tool id="hyphy_busted" name="HyPhy-BUSTED" version="@TOOL_VERSION@+galaxy2" profile="19.09"> | |
| 3 <description>Branch-site Unrestricted Statistical Test for Episodic Diversification</description> | 2 <description>Branch-site Unrestricted Statistical Test for Episodic Diversification</description> |
| 4 <macros> | 3 <macros> |
| 5 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 6 </macros> | 5 </macros> |
| 7 <expand macro="bio_tools"/> | 6 <expand macro="bio_tools"/> |
| 29 </outputs> | 28 </outputs> |
| 30 <tests> | 29 <tests> |
| 31 <test> | 30 <test> |
| 32 <param name="input_file" ftype="fasta" value="absrel-in1.fa"/> | 31 <param name="input_file" ftype="fasta" value="absrel-in1.fa"/> |
| 33 <param name="input_nhx" ftype="nhx" value="absrel-in1.nhx"/> | 32 <param name="input_nhx" ftype="nhx" value="absrel-in1.nhx"/> |
| 34 <output name="busted_output" file="busted-out1.json" compare="sim_size"/> | 33 <output name="busted_output"> |
| 34 <assert_contents> | |
| 35 <has_size value="113683" delta="2000"/> | |
| 36 <has_text text="substitutions"/> | |
| 37 <has_text text="test results"/> | |
| 38 </assert_contents> | |
| 39 </output> | |
| 35 </test> | 40 </test> |
| 36 <test> | 41 <test> |
| 37 <param name="input_file" ftype="nex" value="busted-in2.nex"/> | 42 <param name="input_file" ftype="nex" value="busted-in2.nex"/> |
| 38 <conditional name="branch_cond"> | 43 <conditional name="branch_cond"> |
| 39 <param name="branch_sel" value="specify"/> | 44 <param name="branch_sel" value="specify"/> |
| 40 <param name="branch_label" value="B_US_90_WEAU160_BRANCH" /> | 45 <param name="branch_label" value="B_US_90_WEAU160_BRANCH" /> |
| 41 </conditional> | 46 </conditional> |
| 42 <param name="srv_options" value="specify" /> | 47 <param name="srv_options" value="specify" /> |
| 43 <param name="save_alternative_model" value="true" /> | 48 <param name="save_alternative_model" value="true" /> |
| 44 <output name="busted_output" file="busted-out2-1.json" compare="sim_size"/> | 49 <output name="busted_output"> |
| 45 <output name="alternative_model" file="busted-out2-2.json" compare="sim_size"/> | 50 <assert_contents> |
| 51 <has_size value="112119" delta="2000"/> | |
| 52 <has_text text="substitutions"/> | |
| 53 <has_text text="test results"/> | |
| 54 </assert_contents> | |
| 55 </output> | |
| 56 <output name="alternative_model"> | |
| 57 <assert_contents> | |
| 58 <has_size value="333928" delta="2000"/> | |
| 59 <has_text text="END;"/> | |
| 60 </assert_contents> | |
| 61 </output> | |
| 46 </test> | 62 </test> |
| 47 </tests> | 63 </tests> |
| 48 <help><![CDATA[ | 64 <help><![CDATA[ |
| 49 | 65 |
| 50 BUSTED : Bayesian UnresTricted Test of Episodic Diversification | 66 BUSTED : Bayesian UnresTricted Test of Episodic Diversification |