Mercurial > repos > iuc > hyphy_busted
comparison hyphy_busted.xml @ 35:e908c4003bd8 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954
author | iuc |
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date | Thu, 02 Mar 2023 15:18:01 +0000 |
parents | e931e69b5a80 |
children |
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34:caf23deba39a | 35:e908c4003bd8 |
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1 <?xml version="1.0"?> | 1 <tool id="hyphy_busted" name="HyPhy-BUSTED" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
2 <tool id="hyphy_busted" name="HyPhy-BUSTED" version="@TOOL_VERSION@+galaxy2" profile="19.09"> | |
3 <description>Branch-site Unrestricted Statistical Test for Episodic Diversification</description> | 2 <description>Branch-site Unrestricted Statistical Test for Episodic Diversification</description> |
4 <macros> | 3 <macros> |
5 <import>macros.xml</import> | 4 <import>macros.xml</import> |
6 </macros> | 5 </macros> |
7 <expand macro="bio_tools"/> | 6 <expand macro="bio_tools"/> |
29 </outputs> | 28 </outputs> |
30 <tests> | 29 <tests> |
31 <test> | 30 <test> |
32 <param name="input_file" ftype="fasta" value="absrel-in1.fa"/> | 31 <param name="input_file" ftype="fasta" value="absrel-in1.fa"/> |
33 <param name="input_nhx" ftype="nhx" value="absrel-in1.nhx"/> | 32 <param name="input_nhx" ftype="nhx" value="absrel-in1.nhx"/> |
34 <output name="busted_output" file="busted-out1.json" compare="sim_size"/> | 33 <output name="busted_output"> |
34 <assert_contents> | |
35 <has_size value="113683" delta="2000"/> | |
36 <has_text text="substitutions"/> | |
37 <has_text text="test results"/> | |
38 </assert_contents> | |
39 </output> | |
35 </test> | 40 </test> |
36 <test> | 41 <test> |
37 <param name="input_file" ftype="nex" value="busted-in2.nex"/> | 42 <param name="input_file" ftype="nex" value="busted-in2.nex"/> |
38 <conditional name="branch_cond"> | 43 <conditional name="branch_cond"> |
39 <param name="branch_sel" value="specify"/> | 44 <param name="branch_sel" value="specify"/> |
40 <param name="branch_label" value="B_US_90_WEAU160_BRANCH" /> | 45 <param name="branch_label" value="B_US_90_WEAU160_BRANCH" /> |
41 </conditional> | 46 </conditional> |
42 <param name="srv_options" value="specify" /> | 47 <param name="srv_options" value="specify" /> |
43 <param name="save_alternative_model" value="true" /> | 48 <param name="save_alternative_model" value="true" /> |
44 <output name="busted_output" file="busted-out2-1.json" compare="sim_size"/> | 49 <output name="busted_output"> |
45 <output name="alternative_model" file="busted-out2-2.json" compare="sim_size"/> | 50 <assert_contents> |
51 <has_size value="112119" delta="2000"/> | |
52 <has_text text="substitutions"/> | |
53 <has_text text="test results"/> | |
54 </assert_contents> | |
55 </output> | |
56 <output name="alternative_model"> | |
57 <assert_contents> | |
58 <has_size value="333928" delta="2000"/> | |
59 <has_text text="END;"/> | |
60 </assert_contents> | |
61 </output> | |
46 </test> | 62 </test> |
47 </tests> | 63 </tests> |
48 <help><![CDATA[ | 64 <help><![CDATA[ |
49 | 65 |
50 BUSTED : Bayesian UnresTricted Test of Episodic Diversification | 66 BUSTED : Bayesian UnresTricted Test of Episodic Diversification |