Mercurial > repos > iuc > hyphy_busted
diff test-data/absrel-out2.json @ 33:e931e69b5a80 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
| author | iuc |
|---|---|
| date | Wed, 30 Mar 2022 00:19:42 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/absrel-out2.json Wed Mar 30 00:19:42 2022 +0000 @@ -0,0 +1,535 @@ +{ + "Synonymous site-posteriors": [ +[0.2237313836650769, 0.07034985497742986, 0.07145045464678079, 0.162904629542773, 0.08696014489632299, 0.4973049561752621, 0.9385366945295869, 0.07695133428552869, 0.001997373788362212, 0.000990883865044414, 1.597366276160643e-05, 0.001639173387605954, 0.0006726936008082838, 0.0005936260958686961, 0.01218331055979857, 6.818341915747173e-05, 3.10538784980663e-05, 0.0003850280284965983, 1.706749658825067e-05, 1.954717668341298e-05, 5.757139486184149e-05, 5.547696233589325e-07, 0.1027014607202221, 0.0005061229953062066, 0.0002713590976491243, 0.01071054750911007, 0.01058998805403938, 0.001824707456373813, 0.1040310240977791, 0.007394679956619656, 0.01548570716335477, 0.0008559908124777675, 0.0001902341284497764, 0.04379131907975038, 0.0001602246750758031, 0.872186620749095, 0.007390732327759301, 0.06674897008912457, 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Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection (2015). Mol Biol Evol 32 (5): 1342-1353. v2.2 adds support for multiple-hit models. v2.3 adds support for SRV", + "contact":"spond@temple.edu", + "info":"aBSREL (Adaptive branch-site random effects likelihood)\n uses an adaptive random effects branch-site model framework\n to test whether each branch has evolved under positive selection,\n using a procedure which infers an optimal number of rate categories per branch.", + "requirements":"in-frame codon alignment and a phylogenetic tree", + "version":"2.3" + }, + "branch attributes":{ + "0":{ + "Baboon":{ + "Baseline MG94xREV":0.001882994109917251, + "Baseline MG94xREV omega ratio":0, + "Corrected P-value":1, + "Full adaptive model":0.001888788495524889, + "Full adaptive model (non-synonymous subs/site)":1e-10, + "Full adaptive model (synonymous subs/site)":0.001888788495524889, + "LRT":0, + "Nucleotide GTR":0.001685167654714891, + "Rate Distributions": [ +[0, 1] + ], + "Rate classes":1, + "Uncorrected P-value":1, + "original name":"Baboon", + 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