Mercurial > repos > iuc > hyphy_conv

diff hyphy_conv.xml @ 1:c1d24ff838c8 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e22821f51ae326b3696a9456cbc44f9982512a52"
author iuc
date Tue, 20 Apr 2021 19:55:16 +0000
parents 9ce3d6d4bd0e
children f6e7b5955712
line wrap: on
line diff
--- a/hyphy_conv.xml	Tue Apr 20 10:31:50 2021 +0000
+++ b/hyphy_conv.xml	Tue Apr 20 19:55:16 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="hyphy_conv" name="HyPhy-Conv" version="@VERSION@+galaxy0" profile="19.09">
+<tool id="hyphy_conv" name="HyPhy-Conv" version="@VERSION@+galaxy1" profile="19.09">
     <description>translate an in-frame codon alignment to proteins</description>
     <macros>
         <import>macros.xml</import>
@@ -11,7 +11,7 @@
             '$gencodeid'
             '$deletions'
             conv_input.fa
-            aa.nhx
+            aa.nex
             > ./conv.log
         @ERRORS@
     ]]></command>
@@ -25,13 +25,13 @@
         <data name="conv_log" format="txt" from_work_dir="conv.log">
             <filter>save_log</filter>
         </data>
-        <data name="proteins" format="nhx" from_work_dir="aa.nhx" />
+        <data name="proteins" format="nex" from_work_dir="aa.nex" />
     </outputs>
     <tests>
         <test>
             <param name="input_file" ftype="fasta" value="conv-in1.fa"/>
             <param name="deletions" value="Keep Deletions" />
-            <output name="proteins" file="conv-out1.nhx" />
+            <output name="proteins" file="conv-out1.nex" />
         </test>
     </tests>
     <help><![CDATA[