comparison macros.xml @ 8:c257fa0a98a7 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"

7:62971c58f0dc

        <citations>
            <citation type="doi">10.1093/molbev/msz197</citation>
            <yield/>
        </citations>
    </xml>
    <token name="@VERSION@">2.5.7</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@VERSION@">hyphy</requirement>
            <yield/>
        </requirements>
    </xml>
    <token name="@HYPHYMPI@">\${GALAXY_MPIRUN:-mpirun -np \${GALAXY_SLOTS:-1}} HYPHYMPI</token>
    <token name="@HYPHY_ENVIRONMENT@"><![CDATA[
        export HYPHY=`which hyphy` &&
        export HYPHY_PATH=`dirname \$HYPHY` &&
        export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token>
    <token name="@HYPHY_INVOCATION@"><![CDATA[

8:c257fa0a98a7

        <citations>
            <citation type="doi">10.1093/molbev/msz197</citation>
            <yield/>
        </citations>
    </xml>
    <token name="@VERSION@">2.5.8</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@VERSION@">hyphy</requirement>
            <yield/>
        </requirements>
    </xml>
    <token name="@HYPHYMPI@">\${GALAXY_MPIRUN:-mpirun -np \${GALAXY_SLOTS:-1}} HYPHYMPI</token>
    <token name="@CATCH_MPIERR@"><![CDATA[
        EC=\$? ;
        if [ \$EC -ne 0 ] ; then
            cat errors.log.mpinode0 >&2 ;
        fi ;
        exit \$EC
    ]]></token>
    <token name="@HYPHY_ENVIRONMENT@"><![CDATA[
        export HYPHY=`which hyphy` &&
        export HYPHY_PATH=`dirname \$HYPHY` &&
        export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token>
    <token name="@HYPHY_INVOCATION@"><![CDATA[