diff hyphy_fade.xml @ 34:cf51d3630757 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954

--- a/hyphy_fade.xml	Thu Aug 18 14:04:52 2022 +0000
+++ b/hyphy_fade.xml	Thu Mar 02 15:09:08 2023 +0000
@@ -1,5 +1,4 @@
-<?xml version="1.0"?>
-<tool id="hyphy_fade" name="HyPhy-FADE" version="@TOOL_VERSION@+galaxy1" profile="19.09">
+<tool id="hyphy_fade" name="HyPhy-FADE" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>: FUBAR* Approach to Directional Evolution (*Fast
     Unconstrained Bayesian Approximation)</description>
     <macros>
@@ -24,11 +23,10 @@
     <inputs>
         <expand macro="inputs"/>
         <expand macro="branches"/>
-        <expand macro="substitution"/>
-        <expand macro="branches"/>
+        <expand macro="substitution" argument="--model"/>
         <expand macro="conditional_posteriorEstimationMethod" />
-        <param name="grid_points" type="integer" value="20" min="5" max="50" label="Grid points"/>
-        <param name="concentration" type="float" value="0.5" min="0.001" max="1" label="Concentration parameter of the Dirichlet prior"/>
+        <param argument="--grid" name="grid_points" type="integer" value="20" min="5" max="50" label="Grid points"/>
+        <param argument="--concentration_parameter" name="concentration" type="float" value="0.5" min="0.001" max="1" label="Concentration parameter of the Dirichlet prior"/>
     </inputs>
     <outputs>
         <data name="fade_output" format="hyphy_results.json" />