view test-data/cfel-out1.json @ 31:ac0dea1caeab draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e74f0c1ed183da674db365c3a6ce320b0c08d9bc"
author iuc
date Sat, 27 Nov 2021 11:26:04 +0000
parents 17ac281a46d9
children
line wrap: on
line source

{
 "MLE":{
   "content":{
     "0":      [
[0.06119510183854701, 89.89195279268617, 0.0004623763636215286, 1, 0, 0.02604337408104318, 0.811685158859179, -1, 63.5934805540066],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [0, 0, 30.68649872459121, 0, 4, 0.09420783493835005, 0.60747810805074, -1, 17.97424403638481],
      [4.002735462744614, 1.681163962819147, 1.228805177498639, 2, 1, 0.8623362362181146, 1, -1, 3.706931649150397],
      [3.050065014123722, 3.059937797506153, 2.418613924712312, 4, 3, 0.8197206876541498, 1, -1, 4.950806946880908],
      [0, 24.69410076903886, 2.602816011187676, 6, 0, 0.2048204536099466, 0.7226683929256608, -1, 18.98662250194162],
      [0.7973929595981712, 0.56976393636776, 6.448137478127731, 2, 3, 0.06745323839043926, 0.5733525263187338, -1, 4.538073888148586],
      [0, 1.220294976236213, 1.931034796125328, 2, 1, 0.6817876981968, 1, -1, 1.993993062285827],
      [0, 0.7273121045548806, 0, 1, 0, 0.261419115100697, 0.7638339769348492, -1, 0.5143075999810249],
      [1.621724997367116, 0, 0, 1, 1, 0.9121485865111767, 1, -1, 0.7286149415473206],
      [0.5060806624687831, 1.999902075014571, 0, 3, 1, 0.0321757051476228, 0.752107107825683, -1, 1.641573976803133],
      [0.9420105153372681, 0.7146285434777966, 0, 2, 1, 0.2644815118797826, 0.7381797421122291, -1, 0.9285687782746239],
      [0, 1.987391099359683, 0, 3, 0, 0.3529798862703204, 0.7253542717862628, -1, 1.405353135379039],
      [8.244286695269041, 1.185994719868233, 0.6569566762624601, 3, 1, 0.6286360235526834, 1, -1, 4.927487703059774],
      [0.9500757632276707, 0, 0.5124208919340753, 1, 1, 0.2013061949629433, 0.7239280472705847, -1, 0.726998065759856],
      [0, 0.5627658928917045, 0, 1, 0, 0.268228707078901, 0.7376289444669777, -1, 0.3979512700416927],
      [0, 0.4711115774899237, 0.6829037036151366, 1, 1, 0.7990116922248531, 1, -1, 0.7331418792667797],
      [0.4167417817571659, 0, 0, 0, 1, 0.9206940254260957, 1, -1, 0.1872353755712544],
      [0, 0, 0.5212303676872864, 0, 1, 0.1996277088955986, 0.731968265950528, -1, 0.3053043591603385],
      [0.8675634762363731, 0, 0, 0, 1, 0.9661066726954236, 1, -1, 0.3897823074521307],
      [0.7210654427571777, 0, 0, 1, 0, 0.9836163243596738, 1, -1, 0.3239630987246734],
      [1.427522329748797, 1.811321397351979, 2.047657099183609, 3, 2, 0.9153591138659802, 1, -1, 3.121601237885459],
      [0, 1.169550303774839, 0, 2, 0, 0.1240860099621399, 0.6106337858663201, -1, 0.8270295599708779],
      [0, 0.5199246087354797, 0.6609898247714937, 1, 1, 0.8711034612935368, 1, -1, 0.7548234772115322],
      [15.62849382074995, 0.8354792436567606, 0.3568193143210429, 2, 1, 0.692201812400887, 1, -1, 7.821429665659478],
      [0, 2.048844622077364, 0.7034505168953565, 2, 1, 0.3378069542919415, 0.7097741623886861, -1, 1.86084665052398],
      [0, 1.700054129075257, 0, 2, 0, 0.04433653641539281, 0.5922094506913184, -1, 1.202167203717357],
      [1.996997597242381, 4.191343395708055, 0, 4, 1, 0.1469200405479562, 0.6541439900587571, -1, 3.861063080915803],
      [2.905972734304771, 0.5690151548622607, 0.8753525229497926, 2, 2, 0.7870098322033844, 1, -1, 2.22070423298495],
      [59.02352946734126, 0.9878963984643503, 0, 2, 2, 0.106227812438751, 0.6207687789389512, -1, 27.21689766175553],
      [0, 0.493823010263051, 0.5992185198004483, 1, 1, 0.8822938448128469, 1, -1, 0.700184340303363],
      [0.151693667651528, 0, 1.145340845562134, 0, 1, 0.1082039933982597, 0.6131559625901383, -1, 0.7390230172493181],
      [0, 2.787986645749746, 1.784950467476681, 4, 2, 0.6411055012556299, 1, -1, 3.01699506099285],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [385.3762662337238, 5.564044480778701, 0, 6, 1, 0.02371410328251622, 0.8869074627661065, -1, 177.0778829569787],
      [2.573452429663424, 0.5220696742903632, 0.713573878301312, 2, 1, 0.8351273640659775, 1, -1, 1.943351558242732],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [4.348447273893767, 0.5046984788437628, 2.952069279014304, 3, 3, 0.2835098368661301, 0.6710929049869154, -1, 4.03971590229041],
      [3.338817456675311, 1.137669821142245, 1.726051520309229, 3, 2, 0.7099668603792879, 1, -1, 3.315576435067937],
      [0, 1.06192507216317, 1.553290246319209, 2, 2, 0.7284892577576891, 1, -1, 1.660744930010188],
      [0, 0, 1.933148243144066, 0, 1, 0.04996479332544979, 0.4917587553610058, -1, 1.132318111382804],
      [5.003383438989187, 0.6338143230116781, 0.7516978959854888, 3, 1, 0.8803176064527864, 1, -1, 3.13642964881315],
      [1.596114414620324, 0, 0, 2, 0, 0.9212889142690923, 1, -1, 0.7171085188916039],
      [2.529641127597146, 3.011967029355255, 1.384723782169601, 4, 1, 0.6611347127278093, 1, -1, 4.077478479674415],
      [10.14997717791016, 0.6154387774920496, 0, 2, 1, 0.241723794107553, 0.7793508534157311, -1, 4.995419486552136],
      [1.036797535416651, 0.5778527886615185, 0.7745728206248134, 2, 1, 0.8406923882115405, 1, -1, 1.328132808532359],
      [0, 0.6069339522653456, 5.345355330595698, 1, 3, 0.3847363424728757, 0.7341397555349771, -1, 3.560161018099469],
      [1.690104373748312, 1.074951770605767, 4.385904903400487, 3, 4, 0.3314491211494521, 0.7043293824425857, -1, 4.088462897033456],
      [37.76075692658885, 4.501636262694803, 0, 5, 2, 0.043199817710174, 0.6214127624463491, -1, 20.14856341359648],
      [4.973988644862259, 11.87666518571395, 0, 6, 0, 0.06689282571553856, 0.5956646861336052, -1, 10.63313468176522],
      [0, 1.509119375014007, 0.5969277047371797, 3, 1, 0.4152971577366024, 0.7766056849674464, -1, 1.416793775971109],
      [1.426380026083806, 6.003780556383241, 0, 3, 1, 0.1049038263657717, 0.6328069525935259, -1, 4.886330930517055],
      [0, 3.724095568975781, 10.86153058267145, 3, 4, 0.2580706166315345, 0.791134513280278, -1, 8.995446724789158],
      [0, 12.20201572418876, 0.2462707267909884, 5, 0, 0.09875799401424201, 0.6155914960221086, -1, 8.772718365591594],
      [10.67754104952667, 0.6437702046278084, 10.28878583128985, 3, 3, 0.07067217046389718, 0.5506539948645321, -1, 11.27901095328205],
      [0, 1.024502805099405, 1.848154568858438, 2, 3, 0.6244461476808474, 1, -1, 1.806995544522219],
      [0.6501694979385784, 1.801412202378026, 0.9280040529467484, 4, 1, 0.5557080308475613, 0.9621981645230923, -1, 2.10951880874102],
      [6.08262251036685, 0.7339717298233965, 0, 3, 0, 0.2960882701960703, 0.6752256893495751, -1, 3.251841253054038],
      [0, 3.940293028323709, 0.724645841425226, 4, 1, 0.1646793518058165, 0.6843341952819485, -1, 3.210770285929394],
      [2.525715439229841, 0.5203264215330189, 3.236147645873292, 2, 3, 0.2267814230616741, 0.7572879662952333, -1, 3.398238337847957],
      [0, 1.66574317189596, 1.033362246206075, 2, 1, 0.6981825098370149, 1, -1, 1.783184125336636],
      [0, 2.293045660744385, 1.931269875752346, 3, 2, 0.8830368656096202, 1, -1, 2.752709951141166],
      [50.6441338117998, 0, 0, 1, 1, 0.8891278717234055, 1, -1, 22.75359426345821],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [0.6581107090142762, 1.158962423870136, 0.5347971943090111, 2, 1, 0.5987666036867652, 1, -1, 1.428472016246372],
      [0.4323905724496316, 0, 0, 1, 0, 0.9135475338651236, 1, -1, 0.1942661253803702],
      [0.9968692986409634, 0.5434799477420689, 0, 1, 1, 0.2893889348524278, 0.6680954421901727, -1, 0.8321908421491773],
      [1.197652572567508, 0, 0, 1, 1, 0.9420876112178296, 1, -1, 0.5380860260352346],
      [1.663917089686765, 0, 0, 0, 1, 0.9375578679018587, 1, -1, 0.7475711695940914],
      [0, 2.086288961946702, 1.121121626201897, 3, 1, 0.4891714732172416, 0.8795679374194634, -1, 2.13197062214742],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [0, 0.6531371780374999, 0, 1, 0, 0.2786295096969535, 0.6855752409648725, -1, 0.461855938311967],
      [0.9079601930118207, 4.166556568628996, 0.9432143945954307, 4, 1, 0.2876629695256741, 0.6724121912662631, -1, 3.906724856611323],
      [0, 1.206792672650923, 3.542924429196426, 1, 2, 0.3568455609094989, 0.725327390109525, -1, 2.928589896603286],
      [9.880640874055928, 3.371530210075762, 0.833316948781417, 4, 1, 0.270706474175933, 0.7030848704291592, -1, 7.311444091098465],
      [3.263620668506168, 0.4652912433238916, 0, 2, 1, 0.2588435421307538, 0.7683133710865231, -1, 1.795315808761324],
      [5.872193259274316, 4.385832018419878, 3.583671501629437, 3, 2, 0.8487870347559123, 1, -1, 7.838747841403747],
      [0.7001678859566036, 0.4202476715994486, 0.570701535221909, 1, 2, 0.8336056454349037, 1, -1, 0.946027353297898],
      [0, 0.5636907281917216, 3.143572329896205, 1, 3, 0.2122243163662549, 0.7349249474164755, -1, 2.239914576523292],
      [3.287074504995304, 0, 0, 1, 1, 0.9721552383282605, 1, -1, 1.4768296734694],
      [0, 0.5461879996480163, 0.7487151474213473, 1, 1, 0.828235435742404, 1, -1, 0.8247792738873165],
      [0.6407722392250278, 0, 0, 1, 0, 0.9881835778586947, 1, -1, 0.2878886546030102],
      [3.194983115284816, 29.83918845116686, 0, 6, 1, 0.3430025032595975, 0.7126829789949415, -1, 22.53577896504836],
      [3.61657626736909, 1.184320280774051, 0.8602278960639211, 4, 2, 0.8063714537153168, 1, -1, 2.96621148037958],
      [50.54141290859034, 0, 0, 2, 2, 0.8890960183490699, 1, -1, 22.70744341481916],
      [1.00149872844676, 0.9794774421917719, 0.79104065073158, 2, 1, 0.8681122849194385, 1, -1, 1.605922168232218],
      [2.478325056346672, 2.507275623206525, 0, 4, 0, 0.0265773760440865, 0.7099956171777393, -1, 2.886453065039759],
      [0, 0.4972591225445931, 2.114724306886552, 1, 2, 0.2772893993014431, 0.6913749022582649, -1, 1.59030324811191],
      [0.5707663703812399, 0, 0, 0, 1, 0.9695096575444596, 1, -1, 0.2564361443941914],
      [1.024551478254236, 3.585189394552973, 0.7776285115204995, 3, 1, 0.2696778421262233, 0.7204250925371963, -1, 3.451012643437537],
      [1.499064132890425, 2.268581133655351, 0.6266542863356086, 3, 2, 0.4046637590812993, 0.7643648782646763, -1, 2.644752884217713],
      [0.4690497701255414, 3.083037212823268, 0.956050652526806, 4, 1, 0.36647815640301, 0.7213833183932933, -1, 2.950854055018716],
      [1.165324357362414, 0, 0, 0, 2, 0.9144788393371129, 1, -1, 0.5235614792284518],
      [8.299440046276086, 2.756478387670579, 0, 3, 1, 0.03715262358344229, 0.6947540610103708, -1, 5.678006258846612],
      [0.9927395068825862, 1.151542077068671, 0, 2, 1, 0.134782155622593, 0.6147381244249973, -1, 1.260317202106484],
      [0, 1.221968554986739, 2.741741796411054, 1, 3, 0.5030017833391077, 0.8873710706076712, -1, 2.470038289748266],
      [1.113265347771757, 0, 0.7627887651246475, 0, 1, 0.1951919901647999, 0.7300180432163518, -1, 0.9469664615364187],
      [1.585018231189712, 1.729862175734776, 0, 2, 1, 0.07389440689698046, 0.5314713111436672, -1, 1.935368689004229],
      [0.6102670020768497, 0.8382807340868993, 0, 2, 0, 0.2686253663963265, 0.728013674146566, -1, 0.8669605069319147],
      [0, 2.751205064157212, 0.802243823374224, 2, 1, 0.3012988724380857, 0.6707486803085956, -1, 2.415377044802676],
      [0, 0.5902467163663473, 0, 1, 0, 0.2629575492060569, 0.7565086415620405, -1, 0.4173839128895599],
      [0.5383635717809734, 1.515998121346645, 0.9216339594290136, 3, 1, 0.6874711816851482, 1, -1, 1.853728810553392],
      [0, 0.481190845468739, 0, 1, 0, 0.2723166139452829, 0.688151443348215, -1, 0.3402667263695917],
      [0, 3.27251821956541, 0, 5, 0, 0.01745171804218459, 0.8158678184721297, -1, 2.314111068492279],
      [0, 0.5872817594876903, 0, 1, 0, 0.2584159603667636, 0.7794158804610452, -1, 0.4152872891062357],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [2.21890505975442, 1.990033146773849, 1.017469889400157, 2, 2, 0.6034077258234842, 1, -1, 3.000110385076132],
      [2.862214454024933, 0, 0, 1, 2, 0.9844145511533737, 1, -1, 1.285946890194713],
      [3.703117340141719, 0.5855187342485519, 8.642796633269793, 2, 3, 0.1321361962019112, 0.6177367172439349, -1, 7.140204804630963],
      [0.7127923657618954, 0, 0, 1, 0, 0.9921461533492605, 1, -1, 0.3202461383762046],
      [0, 4.089582006883536, 0.6880686586772411, 3, 1, 0.113866177601587, 0.6083707203284792, -1, 3.294913056800077],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [7.244120186652152, 1.047966384047065, 2.883576678015062, 3, 2, 0.3186870666430698, 0.692959086770396, -1, 5.684739997199993],
      [3.704708318772796, 0, 0, 1, 1, 0.9462192453626561, 1, -1, 1.664465824671172],
      [0, 2.633693580131012, 1.104037666395978, 4, 1, 0.4730128885566699, 0.8587709724281289, -1, 2.509052680349937],
      [0, 0.4566347499089936, 0, 1, 0, 0.283128239385232, 0.6787818046799793, -1, 0.3229022600103157],
      [0.6017003015092119, 2.844750183234372, 0, 5, 0, 0.190939572397941, 0.7438687508003118, -1, 2.281955724065546],
      [1.179110303734344, 0, 0, 2, 0, 0.9167006798670312, 1, -1, 0.5297552830646544],
      [0, 0, 0.8526269308663604, 0, 1, 0.1938730275183067, 0.7398827784882318, -1, 0.4994158722677771],
      [0, 1.668376496735974, 0, 2, 0, 0.04896391246424825, 0.5386030371067307, -1, 1.179766851847139],
      [5.639040616352426, 0, 0, 2, 0, 0.9442717948909276, 1, -1, 2.533530195154592],
      [1.124668095765815, 1.685314664922671, 0, 3, 1, 0.06136004672587703, 0.5737164368869502, -1, 1.697039692908539],
      [1.33722202616223, 0, 0, 1, 1, 0.9151203403135182, 1, -1, 0.6007923353279988],
      [0.1752837462876311, 1.561142638815214, 4.726023459307847, 2, 4, 0.3308998048107157, 0.7112444080414234, -1, 3.950901098596386],
      [0, 3.437648989095744, 1.609232734837918, 3, 1, 0.4909608513815463, 0.874377897222373, -1, 3.373469294895204],
      [0.6066891660467739, 0, 0, 1, 0, 0.9808675353365294, 1, -1, 0.2725756783512759],
      [2.513055010253392, 0, 0.6184461744626488, 1, 2, 0.1874867655060044, 0.7459579819068686, -1, 1.491322509018713],
      [3.299764371642652, 0.4276057502881009, 0, 2, 1, 0.2702664276676093, 0.7118284785048302, -1, 1.78490587447041],
      [0.7573891999831988, 1.586265653088565, 1.111650146087085, 2, 2, 0.7402228990967379, 1, -1, 2.113121781906836],
      [4.772227412448185, 0, 0.6090761550844718, 2, 1, 0.2218869031377975, 0.7544154706685113, -1, 2.50084393550245],
      [1.354998207479255, 0, 0, 1, 1, 0.908459548182884, 1, -1, 0.6087788875068623],
      [0.8560617018755099, 0.5646857472602592, 0.9068137081900917, 1, 2, 0.7214789865155466, 1, -1, 1.315078730109341],
      [0.4122717908825356, 0, 0, 1, 0, 0.9236152031349771, 1, -1, 0.1852270806105654],
      [11.47744615650339, 0.7564062060772175, 0, 3, 1, 0.263665502185258, 0.7470522561915642, -1, 5.69151288968381],
      [0, 1.693111538916773, 2.67628254093792, 2, 2, 0.7133946706521437, 1, -1, 2.764857860838913],
      [2.246554096219588, 0, 2.241321919896286, 1, 2, 0.03506606858438077, 0.7285949805865782, -1, 2.322167700502196],
      [0.7426948365680234, 1.840273857541018, 1.692997137522376, 4, 2, 0.9034959106229583, 1, -1, 2.62665478857086],
      [5.595162859090872, 20.193888455772, 0, 6, 1, 0.1472309374197671, 0.6402833790115454, -1, 16.79361513366499],
      [0, 9.517234629463333, 0, 5, 0, 0.00560860295821386, 1, -1, 6.729966502800369],
      [0.539174303084849, 4.85591423642532, 0, 5, 1, 0.3626752248047733, 0.7214922025371555, -1, 3.676027614332432],
      [2.809473170865717, 3.087098474436862, 0, 5, 1, 0.07376144803206519, 0.5517356312798476, -1, 3.445245419980039],
      [10000, 2.159595663570101, 3.493364330286813, 5, 1, 0.681422508159091, 1, -1, 4496.412382371934],
      [0.710026004894022, 2.259208445252253, 2.04300171486337, 2, 3, 0.9470650044570827, 1, -1, 3.113231308251038],
      [0.7706469649104783, 1.698850645625194, 1.16214197731024, 5, 1, 0.7519658749056793, 1, -1, 2.228266010155036],
      [0, 4.02874261614134, 0, 3, 0, 0.01024620807300813, 0.638680303217507, -1, 2.848863552349389],
      [1.02670575815307, 0, 0.7548492261890443, 1, 1, 0.1864328793306292, 0.7578901833658188, -1, 0.9034261424655761],
      [0, 2.360261809812653, 1.46763700746599, 3, 1, 0.6555637019432755, 1, -1, 2.528673496835839],
      [0, 0.5259388881533686, 0.6170391035843059, 1, 1, 0.9161258269718379, 1, -1, 0.7333327813697857],
      [2.830094370141204, 2.67989095418528, 1.876671064534477, 3, 1, 0.817379401221046, 1, -1, 4.265796930069911],
      [0, 1.479272978915023, 1.059892351242584, 1, 1, 0.790615770981274, 1, -1, 1.666864275155615],
      [0, 1.168896158876738, 0.7984263070357831, 2, 1, 0.7667624989137153, 1, -1, 1.29423550639484],
      [0, 2.162072501679363, 0, 2, 0, 0.04856079107131761, 0.5675542456460245, -1, 1.52887640994813],
      [0, 6.14000013653241, 0, 4, 0, 0.2973602962072562, 0.6699563300091195, -1, 4.341806927626715],
      [0, 1.06404578059133, 0, 2, 0, 0.1093244029899896, 0.6012842164449427, -1, 0.7524236545200654],
      [0, 1.345939883401718, 1.30846241488963, 2, 2, 0.9744848854073144, 1, -1, 1.718176718262745],
      [0.7619926064274329, 0, 3.554766108871895, 1, 2, 0.03719332118165497, 0.6322864600881345, -1, 2.424512101442888],
      [5.060461264473889, 3.907206872715648, 0, 6, 1, 0.009833301878435119, 0.9194137256336836, -1, 5.036505219288939],
      [1.564093384132049, 2.71825030952769, 0, 4, 1, 0.08422205061688548, 0.5833156839021328, -1, 2.624891001926885],
      [1.880766401658642, 2.386845406237341, 4.827515848459815, 5, 2, 0.5066727915134361, 0.8854935702150707, -1, 5.360477990755495],
      [1.59407475963904, 0.534285333759948, 0, 2, 0, 0.2552177150698158, 0.795428545300926, -1, 1.094003814191179],
      [0, 0.5430983302936986, 0, 1, 0, 0.2712472951886882, 0.6948389616477355, -1, 0.3840436547910877],
      [12.02717145181656, 0, 0, 2, 0, 0.9282479527131015, 1, -1, 5.403614570023904],
      [1.850001563738884, 0.5747051774882004, 3.088108715313044, 2, 3, 0.228475055238919, 0.7495585145557517, -1, 3.046392065578623],
      [3.803307245175641, 0, 0, 3, 1, 0.9067714294860527, 1, -1, 1.70876473546941],
      [0.721641417019702, 1.883081788749646, 7.124837113995454, 2, 4, 0.3686486553351745, 0.7180968598716421, -1, 5.829101111521283],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [1.712968751786537, 9.336669329474105, 0, 5, 1, 0.08529549863060126, 0.5696520801400869, -1, 7.371891812181655],
      [0, 0.5352619259012723, 0, 1, 0, 0.2822849884472398, 0.6855492576575823, -1, 0.378502261611586],
      [1.533484063251527, 0.7938811016596651, 0, 1, 1, 0.1164760283828613, 0.6050282585443073, -1, 1.250350555301741],
      [0, 3.497363539992511, 0, 4, 0, 0.06943013457416836, 0.5644971811030209, -1, 2.473106988389141],
      [1.020485454623811, 1.0928127705755, 0, 2, 1, 0.3132480634350011, 0.6891457395570024, -1, 1.231253481530235],
      [0, 0.4609894819711267, 12.67245050755628, 1, 4, 0.03839353137961843, 0.5982991973323871, -1, 7.748715659526805],
      [0, 1.320988783990702, 2.781474874699366, 2, 3, 0.4169260196835819, 0.7719323334735625, -1, 2.563332094192779],
      [149.7570803411987, 2.335110998428668, 0.6467452710031769, 3, 1, 0.369794256323729, 0.7129023292014157, -1, 69.31350715083461],
      [0.9509614505415391, 1.908796635466585, 0, 3, 1, 0.04953789626422545, 0.514643700078342, -1, 1.777027940751451],
      [1.184426372207718, 1.836230603975953, 4.469545752284581, 3, 4, 0.4186649093702789, 0.7675523338455112, -1, 4.448588172231947],
      [0.5560118738244804, 2.456570195349719, 0, 5, 0, 0.149051686322846, 0.6334696668720957, -1, 1.986933123876089],
      [5.401180234593744, 3.066520525347463, 0.436035476378648, 4, 1, 0.1235293776154336, 0.6243241517320562, -1, 4.850508798121204],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [0.594394216856557, 1.500373722448286, 0, 3, 0, 0.04744339974507994, 0.5914610501553299, -1, 1.328018022213997],
      [0, 1.00386607644946, 0, 2, 0, 0.1242856632669779, 0.5959338213057658, -1, 0.7098684997097175],
      [0.9858156621768633, 1.230360024686975, 0, 3, 0, 0.253715634087487, 0.8041495521077977, -1, 1.312941332942153],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [0, 0, 0, 1, 1, 1, 1, 1, 0],
      [2.849251325322419, 0.4539288515966669, 1.440863428624558, 2, 2, 0.3606776103250359, 0.7252334745245345, -1, 2.445079849151379] 
      ]
    },
   "headers":    [
["alpha", "Synonymous substitution rate at a site"],
    ["beta (leaf)", "Non-synonymous substitution rate at a site for leaf branches"],
    ["beta (internal)", "Non-synonymous substitution rate at a site for internal branches"],
    ["subs (leaf)", "Substitutions mapped to leaf branches"],
    ["subs (internal)", "Substitutions mapped to internal branches"],
    ["P-value (overall)", "P-value for the test that non-synonymous rates differ between any of the selected groups: leaf,internal"],
    ["Q-value (overall)", "Q-value for the test that non-synonymous rates differ between any of the selected groups: leaf,internal"],
    ["Permutation p-value", "Label permutation test for significant sites"],
    ["Total branch length", "The total length of branches contributing to inference at this site, and used to scale beta-alpha"] 
    ]
  },
 "analysis":{
   "authors":"Sergei L Kosakovsky Pond and Steven Weaver",
   "citation":"TBD",
   "contact":"spond@temple.edu",
   "help":"http://www.hyphy.org/methods/other/contrast-fel/",
   "info":"Contrast-FEL (Fixed Effects Likelihood) investigates whether or not selective pressures differ between two or more sets of\n    branches at a site. Site-specific synonymous (alpha) and non-synonymous (beta, one per branch set) substitution rates are estimated\n    and then beta rates are tested for equality at each site. LRT and permutation tests ar used to assess significance at each site, and FDR is applied alignment wide to call sites with different selective profiles",
   "requirements":"in-frame codon alignment and a phylogenetic tree; only single partition data are supported",
   "version":"0.5"
  },
 "branch attributes":{
   "0":{
     "Baboon":{
       "Global MG94xREV":0.00174723192666697,
       "Nucleotide GTR":0.001680040630127455,
       "original name":"Baboon"
      },
     "Cat":{
       "Global MG94xREV":0.2766003372098463,
       "Nucleotide GTR":0.2660909938917123,
       "original name":"Cat"
      },
     "Chimp":{
       "Global MG94xREV":0.001830140161785499,
       "Nucleotide GTR":0.001818373670119325,
       "original name":"Chimp"
      },
     "Cow":{
       "Global MG94xREV":0.2512572530183805,
       "Nucleotide GTR":0.2481025999892287,
       "original name":"Cow"
      },
     "Horse":{
       "Global MG94xREV":0.2146526643681058,
       "Nucleotide GTR":0.2090310577070883,
       "original name":"Horse"
      },
     "Human":{
       "Global MG94xREV":0,
       "Nucleotide GTR":0,
       "original name":"Human"
      },
     "Mouse":{
       "Global MG94xREV":0.1196529267467225,
       "Nucleotide GTR":0.1180171198334285,
       "original name":"Mouse"
      },
     "Node1":{
       "Global MG94xREV":0.2867621941821688,
       "Nucleotide GTR":0.2767237570684924
      },
     "Node12":{
       "Global MG94xREV":0.01761131890611436,
       "Nucleotide GTR":0.01784803874223016
      },
     "Node2":{
       "Global MG94xREV":0.06219797728198844,
       "Nucleotide GTR":0.06613162123865737
      },
     "Node3":{
       "Global MG94xREV":0.09597116861714063,
       "Nucleotide GTR":0.09886326330774685
      },
     "Node8":{
       "Global MG94xREV":0.1106045193971755,
       "Nucleotide GTR":0.106239268140425
      },
     "Node9":{
       "Global MG94xREV":0.02619890351105751,
       "Nucleotide GTR":0.02566573875750134
      },
     "Pig":{
       "Global MG94xREV":0.1934958194962019,
       "Nucleotide GTR":0.1871893456388788,
       "original name":"Pig"
      },
     "Rat":{
       "Global MG94xREV":0.06790438491245605,
       "Nucleotide GTR":0.06661283005976348,
       "original name":"Rat"
      },
     "RhMonkey":{
       "Global MG94xREV":0.003743023039574662,
       "Nucleotide GTR":0.003775170135617877,
       "original name":"RhMonkey"
      }
    },
   "attributes":{
     "Global MG94xREV":{
       "attribute type":"branch length",
       "display order":1
      },
     "Nucleotide GTR":{
       "attribute type":"branch length",
       "display order":0
      },
     "original name":{
       "attribute type":"node label",
       "display order":-1
      }
    }
  },
 "data partitions":{
   "0":{
     "coverage":      [
[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186] 
      ],
     "name":"fel.filter.default"
    }
  },
 "fits":{
   "Global MG94xREV":{
     "AIC-c":6991.186386461754,
     "Equilibrium frequencies":      [
[0.04876086397632926],
      [0.03982224127745371],
      [0.0494959405650269],
      [0.04152830682371345],
      [0.01810345074594235],
      [0.01478480742075003],
      [0.01837636270304883],
      [0.01541821854326533],
      [0.01892910005547028],
      [0.01545910240515689],
      [0.01921445878706794],
      [0.01612140169177368],
      [0.02829747763884322],
      [0.02311011106415996],
      [0.02872406592369408],
      [0.02410019507229243],
      [0.01663805943190806],
      [0.01358804506433061],
      [0.01688888041768248],
      [0.01417018446135155],
      [0.006177213955434187],
      [0.005044834822351987],
      [0.006270336287397383],
      [0.00526096577332031],
      [0.006458939937330408],
      [0.005274916061901906],
      [0.006556309326397028],
      [0.005500904159606446],
      [0.009655594186286731],
      [0.007885574003572761],
      [0.009801153568494354],
      [0.008223407979974132],
      [0.03327785448210915],
      [0.02717750758119989],
      [0.03377952261833742],
      [0.02834184710178207],
      [0.01235507229404208],
      [0.01009019590244688],
      [0.01254132667213156],
      [0.01052248035033209],
      [0.01291855364640413],
      [0.01055038238273567],
      [0.01311330258173711],
      [0.01100238215235291],
      [0.01931219560697892],
      [0.0157719705998612],
      [0.01960332955558842],
      [0.01644767379420349],
      [0.01965132601881859],
      [0.02049322866376102],
      [0.008933621043463411],
      [0.007295949736387736],
      [0.009068296583349953],
      [0.007608523013862737],
      [0.007628698224327205],
      [0.009481877006094248],
      [0.00795552712159237],
      [0.01396413011303752],
      [0.01140428846505027],
      [0.01417464125436193],
      [0.01189287130232129] 
      ],
     "Log Likelihood":-3463.018342931476,
     "Rate Distributions":{
       "non-synonymous/synonymous rate ratio for *internal*":        [
[0.6757243377045866, 1] 
        ],
       "non-synonymous/synonymous rate ratio for *leaf*":        [
[1.251739840537981, 1] 
        ]
      },
     "display order":1,
     "estimated parameters":32
    },
   "Nucleotide GTR":{
     "AIC-c":7112.857310169033,
     "Equilibrium frequencies":      [
[0.3592490842490842],
      [0.181959706959707],
      [0.240018315018315],
      [0.2187728937728937] 
      ],
     "Log Likelihood":-3532.32122446679,
     "Rate Distributions":{
       "Substitution rate from nucleotide A to nucleotide C":0.5501644800943087,
       "Substitution rate from nucleotide A to nucleotide G":1,
       "Substitution rate from nucleotide A to nucleotide T":0.2647746107611847,
       "Substitution rate from nucleotide C to nucleotide G":0.4917423221832032,
       "Substitution rate from nucleotide C to nucleotide T":1.02837595903795,
       "Substitution rate from nucleotide G to nucleotide T":0.304509117524575
      },
     "display order":0,
     "estimated parameters":24
    }
  },
 "input":{
   "file name":"/tmp/tmp29yw9zzo/job_working_directory/000/3/working/cfel_input.fa",
   "number of sequences":10,
   "number of sites":187,
   "partition count":1,
   "trees":{
     "0":"((((Pig:0.147969,Cow:0.21343)Node3:0.08509899999999999,Horse:0.165787,Cat:0.264806)Node2:0.058611,((RhMonkey:0.002015,Baboon:0.003108)Node9:0.022733,(Human:0.004349,Chimp:0.000799)Node12:0.011873)Node8:0.101856)Node1:0.340802,Rat:0.050958,Mouse:0.09795)"
    }
  },
 "tested":{
   "0":{
     "Baboon":"leaf",
     "Cat":"leaf",
     "Chimp":"leaf",
     "Cow":"leaf",
     "Horse":"leaf",
     "Human":"leaf",
     "Mouse":"leaf",
     "Node1":"internal",
     "Node12":"internal",
     "Node2":"internal",
     "Node3":"internal",
     "Node8":"internal",
     "Node9":"internal",
     "Pig":"leaf",
     "Rat":"leaf",
     "RhMonkey":"leaf"
    }
  },
 "timers":{
   "FEL analysis":{
     "order":2,
     "timer":180
    },
   "Model fitting":{
     "order":1,
     "timer":13
    },
   "Total time":{
     "order":0,
     "timer":193
    }
  }
}