annotate test-data/relax-out1.json @ 35:ec783806a5c3 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954
author iuc
date Thu, 02 Mar 2023 15:15:38 +0000
parents 8a6ef85b934d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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6c3ece5fb602 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
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1 {
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iuc
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4 "0":{
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5 "Baboon":{
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
102 "Node3":{
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
105 "Nucleotide GTR":0.09883748387954429,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
129 "Pig":{
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
132 "Nucleotide GTR":0.1871390433004313,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
137 "original name":"Pig"
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iuc
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diff changeset
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iuc
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diff changeset
139 "Rat":{
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iuc
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diff changeset
140 "General descriptive":0.07157977734335202,
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iuc
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diff changeset
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iuc
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diff changeset
142 "Nucleotide GTR":0.06661490534189227,
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iuc
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diff changeset
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iuc
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diff changeset
144 "RELAX null":0.0734705682786943,
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iuc
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diff changeset
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iuc
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diff changeset
146 "k (general descriptive)":1.316568267879453,
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iuc
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diff changeset
147 "original name":"Rat"
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iuc
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diff changeset
148 },
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iuc
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diff changeset
149 "RhMonkey":{
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iuc
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diff changeset
150 "General descriptive":0.003672848089716511,
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iuc
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diff changeset
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iuc
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diff changeset
152 "Nucleotide GTR":0.003778804730491441,
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iuc
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diff changeset
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iuc
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diff changeset
154 "RELAX null":0.003661271320845124,
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iuc
parents: 26
diff changeset
155 "RELAX partitioned descriptive":0.003625957794514879,
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iuc
parents: 26
diff changeset
156 "k (general descriptive)":5.196295069596697,
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iuc
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diff changeset
157 "original name":"RhMonkey"
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iuc
parents:
diff changeset
158 }
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iuc
parents:
diff changeset
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iuc
parents:
diff changeset
160 "attributes":{
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iuc
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diff changeset
161 "General descriptive":{
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iuc
parents:
diff changeset
162 "attribute type":"branch length",
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iuc
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diff changeset
163 "display order":4
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iuc
parents:
diff changeset
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iuc
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diff changeset
165 "MG94xREV with separate rates for branch sets":{
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iuc
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diff changeset
166 "attribute type":"branch length",
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iuc
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diff changeset
167 "display order":1
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168 },
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
169 "Nucleotide GTR":{
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diff changeset
170 "attribute type":"branch length",
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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diff changeset
171 "display order":0
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diff changeset
172 },
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diff changeset
173 "RELAX alternative":{
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iuc
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diff changeset
174 "attribute type":"branch length",
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diff changeset
175 "display order":2
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diff changeset
176 },
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iuc
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diff changeset
177 "RELAX null":{
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iuc
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diff changeset
178 "attribute type":"branch length",
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iuc
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diff changeset
179 "display order":3
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iuc
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180 },
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iuc
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diff changeset
181 "RELAX partitioned descriptive":{
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iuc
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diff changeset
182 "attribute type":"branch length",
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iuc
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183 "display order":5
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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diff changeset
184 },
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iuc
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diff changeset
185 "k (general descriptive)":{
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diff changeset
186 "attribute type":"branch label",
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diff changeset
187 "display order":4
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diff changeset
188 },
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iuc
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diff changeset
189 "original name":{
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diff changeset
190 "attribute type":"node label",
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diff changeset
191 "display order":-1
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diff changeset
192 }
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193 }
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194 },
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diff changeset
195 "data partitions":{
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diff changeset
196 "0":{
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iuc
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diff changeset
197 "coverage": [
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diff changeset
198 [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186]
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iuc
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diff changeset
199 ],
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diff changeset
200 "name":"relax.filter.default"
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diff changeset
201 }
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diff changeset
202 },
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diff changeset
203 "fits":{
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iuc
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diff changeset
204 "General descriptive":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
205 "AIC-c":6945.892677835464,
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diff changeset
206 "Log Likelihood":-3420.487593043145,
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
207 "Rate Distributions":{
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iuc
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diff changeset
208 "Shared":{
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iuc
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diff changeset
209 "0":{
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iuc
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diff changeset
210 "omega":2.201451464048879e-18,
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iuc
parents: 26
diff changeset
211 "proportion":0.3073650505039141
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diff changeset
212 },
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iuc
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diff changeset
213 "1":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
214 "omega":2.201451464048879e-18,
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iuc
parents: 26
diff changeset
215 "proportion":0.2383891488636319
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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diff changeset
216 },
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iuc
parents: 1
diff changeset
217 "2":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
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diff changeset
218 "omega":2.201451281679838,
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iuc
parents: 26
diff changeset
219 "proportion":0.4542458006324541
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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diff changeset
220 }
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iuc
parents: 1
diff changeset
221 }
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iuc
parents: 1
diff changeset
222 },
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iuc
parents: 1
diff changeset
223 "display order":4,
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iuc
parents: 1
diff changeset
224 "estimated parameters":51
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iuc
parents: 1
diff changeset
225 },
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iuc
parents: 1
diff changeset
226 "MG94xREV with separate rates for branch sets":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
227 "AIC-c":6987.566513560764,
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iuc
parents: 1
diff changeset
228 "Equilibrium frequencies": [
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diff changeset
229 [0.04876086397632926],
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diff changeset
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diff changeset
252 [0.00526096577332031],
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iuc
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diff changeset
253 [0.006458939937330408],
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iuc
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diff changeset
254 [0.005274916061901906],
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iuc
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diff changeset
255 [0.006556309326397028],
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iuc
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diff changeset
256 [0.005500904159606446],
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iuc
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diff changeset
257 [0.009655594186286731],
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iuc
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diff changeset
258 [0.007885574003572761],
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iuc
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diff changeset
259 [0.009801153568494354],
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iuc
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diff changeset
260 [0.008223407979974132],
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iuc
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diff changeset
261 [0.03327785448210915],
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iuc
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diff changeset
262 [0.02717750758119989],
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iuc
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diff changeset
263 [0.03377952261833742],
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iuc
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diff changeset
264 [0.02834184710178207],
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iuc
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diff changeset
265 [0.01235507229404208],
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iuc
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diff changeset
266 [0.01009019590244688],
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iuc
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diff changeset
267 [0.01254132667213156],
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iuc
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diff changeset
268 [0.01052248035033209],
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iuc
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diff changeset
269 [0.01291855364640413],
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iuc
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diff changeset
270 [0.01055038238273567],
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iuc
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diff changeset
271 [0.01311330258173711],
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iuc
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diff changeset
272 [0.01100238215235291],
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iuc
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diff changeset
273 [0.01931219560697892],
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iuc
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diff changeset
274 [0.0157719705998612],
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iuc
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diff changeset
275 [0.01960332955558842],
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iuc
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diff changeset
276 [0.01644767379420349],
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iuc
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diff changeset
277 [0.01965132601881859],
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iuc
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diff changeset
278 [0.02049322866376102],
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iuc
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diff changeset
279 [0.008933621043463411],
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iuc
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diff changeset
280 [0.007295949736387736],
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iuc
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diff changeset
281 [0.009068296583349953],
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iuc
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diff changeset
282 [0.007608523013862737],
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iuc
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diff changeset
283 [0.007628698224327205],
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iuc
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diff changeset
284 [0.009481877006094248],
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iuc
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diff changeset
285 [0.00795552712159237],
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iuc
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diff changeset
286 [0.01396413011303752],
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iuc
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diff changeset
287 [0.01140428846505027],
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
288 [0.01417464125436193],
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
289 [0.01189287130232129]
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
290 ],
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
291 "Log Likelihood":-3461.208406480981,
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
292 "Rate Distributions":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
293 "non-synonymous/synonymous rate ratio for *Reference*": [
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
294 [0.7685912547191639, 1]
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
295 ],
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
296 "non-synonymous/synonymous rate ratio for *Test*": [
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
297 [1.603198088111489, 1]
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
298 ]
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
299 },
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iuc
parents: 1
diff changeset
300 "display order":1,
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
301 "estimated parameters":32
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
302 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
303 "Nucleotide GTR":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
304 "AIC-c":7112.857288723968,
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
305 "Equilibrium frequencies": [
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
306 [0.3592490842490842],
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
307 [0.181959706959707],
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iuc
parents: 1
diff changeset
308 [0.240018315018315],
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
309 [0.2187728937728937]
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
310 ],
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
311 "Log Likelihood":-3532.321213744258,
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
312 "Rate Distributions":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
313 "Substitution rate from nucleotide A to nucleotide C":0.5501644800943087,
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
314 "Substitution rate from nucleotide A to nucleotide G":1,
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
315 "Substitution rate from nucleotide A to nucleotide T":0.2646800222727828,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
316 "Substitution rate from nucleotide C to nucleotide G":0.4918071762416347,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
317 "Substitution rate from nucleotide C to nucleotide T":1.028675134787727,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
318 "Substitution rate from nucleotide G to nucleotide T":0.3045013055839741
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
319 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
320 "display order":0,
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
321 "estimated parameters":24
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
322 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
323 "RELAX alternative":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
324 "AIC-c":6931.926773483473,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
325 "Log Likelihood":-3429.236709163995,
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
326 "Rate Distributions":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
327 "Reference":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
328 "0":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
329 "omega":1.761161171239182e-19,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
330 "proportion":0.2691773911207853
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
331 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
332 "1":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
333 "omega":1.762922332410267e-19,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
334 "proportion":0.2692122656891806
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
335 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
336 "2":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
337 "omega":2.208286837998088,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
338 "proportion":0.4616103431900341
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
339 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
340 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
341 "Test":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
342 "0":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
343 "omega":1.673670300056362e-44,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
344 "proportion":0.2691773911207853
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
345 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
346 "1":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
347 "omega":1.677579612236672e-44,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
348 "proportion":0.2692122656891806
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
349 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
350 "2":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
351 "omega":6.354762788556926,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
352 "proportion":0.4616103431900341
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
353 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
354 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
355 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
356 "display order":2,
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
357 "estimated parameters":36
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
358 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
359 "RELAX null":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
360 "AIC-c":6946.648596594286,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
361 "Log Likelihood":-3437.63727539638,
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
362 "Rate Distributions":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
363 "Reference":{
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iuc
parents: 1
diff changeset
364 "0":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
365 "omega":1.408928936991542e-20,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
366 "proportion":0.265244047162938
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
367 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
368 "1":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
369 "omega":1.410337865928411e-20,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
370 "proportion":0.28512630848952
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
371 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
372 "2":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
373 "omega":3.213510017765925,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
374 "proportion":0.4496296443475419
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
375 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
376 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
377 "Test":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
378 "0":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
379 "omega":1.408928936991542e-20,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
380 "proportion":0.265244047162938
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
381 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
382 "1":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
383 "omega":1.410337865928411e-20,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
384 "proportion":0.28512630848952
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
385 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
386 "2":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
387 "omega":3.213510017765925,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
388 "proportion":0.4496296443475419
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
389 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
390 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
391 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
392 "display order":3,
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
393 "estimated parameters":35
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
394 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
395 "RELAX partitioned descriptive":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
396 "AIC-c":6937.049237937651,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
397 "Log Likelihood":-3427.627954124649,
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
398 "Rate Distributions":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
399 "Reference":{
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iuc
parents: 1
diff changeset
400 "0":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
401 "omega":0.1847557016619168,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
402 "proportion":0.4766160247339328
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
403 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
404 "1":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
405 "omega":0.3367540359539261,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
406 "proportion":0.3005513276312735
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
407 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
408 "2":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
409 "omega":4.272816072857538,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
410 "proportion":0.2228326476347937
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
411 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
412 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
413 "Test":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
414 "0":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
415 "omega":1.127143149593234e-21,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
416 "proportion":0.2367540589657237
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
417 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
418 "1":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
419 "omega":1.128270292740756e-21,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
420 "proportion":0.2771164325302933
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
421 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
422 "2":{
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
423 "omega":6.023626417874829,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
424 "proportion":0.4861295085039831
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
425 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
426 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
427 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
428 "display order":5,
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
429 "estimated parameters":40
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
430 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
431 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
432 "input":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
433 "file name":"/tmp/tmpkgsdjj1d/job_working_directory/000/3/working/./input.fasta",
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
434 "number of sequences":10,
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
435 "number of sites":187,
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
436 "partition count":1,
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
437 "trees":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
438 "0":"((((Pig:0.147969,Cow:0.21343)Node3:0.08509899999999999,Horse:0.165787,Cat:0.264806)Node2:0.058611,((RhMonkey:0.002015,Baboon:0.003108)Node9:0.022733,(Human:0.004349,Chimp:0.000799)Node12:0.011873)Node8:0.101856)Node1:0.340802,Rat:0.050958,Mouse:0.09795)"
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
439 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
440 },
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
441 "runtime":"2.5.32",
26
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
442 "test results":{
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
443 "LRT":16.80113246476958,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
444 "p-value":4.150852429507523e-05,
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
445 "relaxation or intensification parameter":2.334214628944839
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
446 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
447 "tested":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
448 "0":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
449 "Baboon":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
450 "Cat":"Test",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
451 "Chimp":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
452 "Cow":"Test",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
453 "Horse":"Test",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
454 "Human":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
455 "Mouse":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
456 "Node1":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
457 "Node12":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
458 "Node2":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
459 "Node3":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
460 "Node8":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
461 "Node9":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
462 "Pig":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
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463 "Rat":"Reference",
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
464 "RhMonkey":"Reference"
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
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465 }
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
466 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
467 "timers":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
468 "General descriptive model fitting":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
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469 "order":2,
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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parents: 26
diff changeset
470 "timer":127
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
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471 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
472 "Overall":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
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473 "order":0,
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
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474 "timer":396
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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475 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
476 "Preliminary model fitting":{
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iuc
parents: 1
diff changeset
477 "order":1,
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
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478 "timer":8
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
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479 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
480 "RELAX alternative model fitting":{
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iuc
parents: 1
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481 "order":3,
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
diff changeset
482 "timer":103
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
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483 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
484 "RELAX null model fitting":{
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iuc
parents: 1
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485 "order":4,
33
8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
iuc
parents: 26
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486 "timer":41
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
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487 },
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
diff changeset
488 "RELAX partitioned descriptive":{
8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 1
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489 "order":5,
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8a6ef85b934d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
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parents: 26
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490 "timer":116
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8276bb2adea5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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parents: 1
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491 }
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6c3ece5fb602 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
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492 }
6c3ece5fb602 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
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493 }