Mercurial > repos > iuc > hyphy_fel
comparison hyphy_fel.xml @ 2:a8b34daec0d9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 533e8f97b4df382944ac8a31d98e04c9efeb6798"
| author | iuc |
|---|---|
| date | Thu, 13 Feb 2020 15:04:13 -0500 |
| parents | 6c3ece5fb602 |
| children | e90f16ec5929 |
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| 1:6c3ece5fb602 | 2:a8b34daec0d9 |
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| 38 <output name="fel_output" file="fel-out1.json" compare="sim_size"/> | 38 <output name="fel_output" file="fel-out1.json" compare="sim_size"/> |
| 39 </test> | 39 </test> |
| 40 </tests> | 40 </tests> |
| 41 <help><![CDATA[ | 41 <help><![CDATA[ |
| 42 FEL (Fixed Effects Likelihood) uses a maximum-likelihood (ML) approach to infer nonsynoymous (dN) and synonymous (dS) substitution rates on a per-site basis for a given coding alignment and corresponding phylogeny. This method assumes that the selection pressure for each site is constant along the entire phylogeny. | 42 FEL (Fixed Effects Likelihood) uses a maximum-likelihood (ML) approach to infer nonsynoymous (dN) and synonymous (dS) substitution rates on a per-site basis for a given coding alignment and corresponding phylogeny. This method assumes that the selection pressure for each site is constant along the entire phylogeny. |
| 43 | |
| 44 See the online documentation_ for more information. | |
| 45 | |
| 46 .. _documentation: http://hyphy.org/methods/selection-methods/#fel | |
| 43 ]]></help> | 47 ]]></help> |
| 44 <expand macro="citations"> | 48 <expand macro="citations"> |
| 45 <citation type="doi">10.1093/molbev/msi105</citation> | 49 <citation type="doi">10.1093/molbev/msi105</citation> |
| 46 </expand> | 50 </expand> |
| 47 </tool> | 51 </tool> |