Mercurial > repos > iuc > hyphy_fel

comparison hyphy_fel.xml @ 35:ec783806a5c3 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954
author iuc
date Thu, 02 Mar 2023 15:15:38 +0000
parents 8a6ef85b934d
children
comparison
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34:b110a31a9c61 35:ec783806a5c3
1 <?xml version="1.0"?> 1 <tool id="hyphy_fel" name="HyPhy-FEL" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <tool id="hyphy_fel" name="HyPhy-FEL" version="@TOOL_VERSION@+galaxy1" profile="19.09">
3 <description>Fixed Effects Likelihood</description> 2 <description>Fixed Effects Likelihood</description>
4 <macros> 3 <macros>
5 <import>macros.xml</import> 4 <import>macros.xml</import>
6 </macros> 5 </macros>
7 <expand macro="bio_tools"/> 6 <expand macro="bio_tools"/>
23 ]]></command> 22 ]]></command>
24 <inputs> 23 <inputs>
25 <expand macro="inputs"/> 24 <expand macro="inputs"/>
26 <expand macro="gencode"/> 25 <expand macro="gencode"/>
27 <expand macro="branches"/> 26 <expand macro="branches"/>
28 <param name="p_value" type="float" value=".1" min="0" max="1" label="P-value"/> 27 <param argument="--pvalue" name="p_value" type="float" value=".1" min="0" max="1" label="P-value"/>
29 <param name="include_srv" type="select" label="Include synonymous rate variation" help = "Allow synonymous rates to vary from site to site"> 28 <param name="include_srv" type="select" label="Include synonymous rate variation" help = "Allow synonymous rates to vary from site to site">
30 <option value="Yes">Yes (recommended)</option> 29 <option value="Yes">Yes (recommended)</option>
31 <option value="No">No</option> 30 <option value="No">No</option>
32 </param> 31 </param>
33 <param argument="--ci" type="boolean" truevalue="--ci Yes" falsevalue="" label="Compute profile likelihood confidence intervals for each variable site" /> 32 <param argument="--ci" type="boolean" truevalue="--ci Yes" falsevalue="" label="Compute profile likelihood confidence intervals for each variable site" />