Mercurial > repos > iuc > hyphy_fel
diff hyphy_fel.xml @ 24:389fd0e51bcb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
author | iuc |
---|---|
date | Tue, 20 Apr 2021 10:28:22 +0000 |
parents | 2e5ab7526bd4 |
children | 8276bb2adea5 |
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--- a/hyphy_fel.xml Fri Apr 09 21:49:59 2021 +0000 +++ b/hyphy_fel.xml Tue Apr 20 10:28:22 2021 +0000 @@ -3,14 +3,17 @@ <description>Fixed Effects Likelihood</description> <macros> <import>macros.xml</import> + <token name="@OPERATION@">FEL</token> + <token name="@operation@">fel</token> </macros> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ - ln -s '$input_file' fel_input.fa && - ln -s '$input_nhx' fel_input.nhx && + @SYMLINK_FILES@ @HYPHYMPI@ fel - --alignment ./fel_input.fa - --tree ./fel_input.nhx + --alignment ./$input_file + #if $input_nhx: + --tree ./input.nhx + #end if --code '$gencodeid' --branches '$branches' --srv '$include_srv' @@ -18,7 +21,7 @@ --output '$fel_output' > '$fel_log' ; - @CATCH_MPIERR@ + @CATCH_ERROR@ ]]></command> <inputs> <expand macro="inputs"/>