Mercurial > repos > iuc > hyphy_fel
diff hyphy_fel.xml @ 3:e90f16ec5929 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f14f2bae2b27dc04e574803c7d4442a64cfe43e4"
author | iuc |
---|---|
date | Fri, 14 Feb 2020 16:47:30 -0500 |
parents | a8b34daec0d9 |
children | 1b62167f7ab2 |
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--- a/hyphy_fel.xml Thu Feb 13 15:04:13 2020 -0500 +++ b/hyphy_fel.xml Fri Feb 14 16:47:30 2020 -0500 @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="hyphy_fel" name="HyPhy-FEL" version="@VERSION@+galaxy0"> +<tool id="hyphy_fel" name="HyPhy-FEL" version="@VERSION@+galaxy1"> <description>Fixed Effects Likelihood</description> <macros> <import>macros.xml</import> @@ -8,13 +8,14 @@ <command detect_errors="exit_code"><![CDATA[ ln -s '$input_file' fel_input.fa && ln -s '$input_nhx' fel_input.nhx && - @HYPHY_INVOCATION@ fel + @HYPHYMPI@ fel --alignment ./fel_input.fa --tree ./fel_input.nhx --code '$gencodeid' --branches '$branches' --srv '$include_srv' --pvalue '$p_value' + --output '$fel_output' > '$fel_log' ]]></command> <inputs> @@ -29,7 +30,7 @@ </inputs> <outputs> <data name="fel_log" format="txt"/> - <data name="fel_output" format="hyphy_results.json" from_work_dir="fel_input.fa.FEL.json"/> + <data name="fel_output" format="hyphy_results.json" /> </outputs> <tests> <test>