Mercurial > repos > iuc > hyphy_fubar
diff hyphy_fubar.xml @ 26:cd41e7a4d35f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
author | iuc |
---|---|
date | Tue, 27 Apr 2021 18:04:56 +0000 |
parents | c5ef306c2041 |
children | 099fc3ec12d2 |
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--- a/hyphy_fubar.xml Tue Apr 20 19:48:40 2021 +0000 +++ b/hyphy_fubar.xml Tue Apr 27 18:04:56 2021 +0000 @@ -1,26 +1,22 @@ <?xml version="1.0"?> -<tool id="hyphy_fubar" name="HyPhy-FUBAR" version="@VERSION@+galaxy0" profile="19.09"> +<tool id="hyphy_fubar" name="HyPhy-FUBAR" version="@VERSION@+galaxy1" profile="19.09"> <description>Fast Unconstrained Bayesian AppRoximation</description> <macros> <import>macros.xml</import> - <token name="@OPERATION@">FUBAR</token> - <token name="@operation@">fubar</token> </macros> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ @SYMLINK_FILES@ + ln -s '$fubar_output' ${input_file}.FUBAR.json && hyphy fubar --alignment ./$input_file - #if $input_nhx: - --tree ./input.nhx - #end if + @INPUT_TREE@ --code '$gencodeid' --method '$posteriorEstimationMethod.method' --grid '$grid_points' @posteriorEstimationMethod_cmd@ --concentration_parameter '$concentration' - > '$fubar_log' ; - @CATCH_ERROR@ + @ERRORS@ ]]></command> <inputs> <expand macro="inputs"/> @@ -31,7 +27,6 @@ </inputs> <outputs> - <data name="fubar_log" format="txt"/> <data name="fubar_output" format="hyphy_results.json" /> </outputs> <tests>