Mercurial > repos > iuc > hyphy_fubar
view test-data/gard-out1.json @ 25:296409764676 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e22821f51ae326b3696a9456cbc44f9982512a52"
author | iuc |
---|---|
date | Tue, 20 Apr 2021 19:48:40 +0000 |
parents | 0f108ee932ea |
children | cd41e7a4d35f |
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{ "analysis":{ "authors":"Sergei L Kosakovsky Pond", "citation":"**Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm**, _Mol Biol Evol 23(10), 1891–1901", "contact":"spond@temple.edu", "info":"GARD : Genetic Algorithms for Recombination Detection. Implements a heuristic\n approach to screening alignments of sequences for recombination, by using the CHC genetic algorithm to search for phylogenetic\n incongruence among different partitions of the data. The number of partitions is determined using a step-up procedure, while the\n placement of breakpoints is searched for with the GA. The best fitting model (based on c-AIC) is returned; and additional post-hoc\n tests run to distinguish topological incongruence from rate-variation.", "requirements":"A sequence alignment.", "version":"0.1" }, "baselineScore":8884.998566352424, "breakpointData":{ "0":{ "bps": [ [1, 461] ], 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