Mercurial > repos > iuc > hyphy_gard

{
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    },
   "headers":    [
["rate", "Mean posterior relative rate at a site"],
    ["bias", "Mean posterior bias parameter at a site"],
    ["Prob[bias>0]", "Posterior probability of substitution bias"],
    ["BayesFactor[bias>0]", "Empiricial Bayes Factor for substitution bias"]
    ]
  },
 "analysis":{
   "authors":"Sergei L Kosakovsky Pond",
   "citation":"TBD",
   "contact":"spond@temple.edu",
   "info":"FADE (FUBAR Approach to Directional Evolution) is a fast method to test whether or not a subset of sites in a protein alignment\n                            evolve towards a particular residue along a subset of branches at accelerated rates compared to reference model.\n                            FADE uses a random effects model and latent Dirichlet allocation (LDA) - inspired approximation methods to allocate sites to rate classes.",
   "requirements":"A protein alignment and a **rooted** phylogenetic tree (optionally annotated with {})",
   "version":"0.2"
  },
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    }
  },
 "settings":{
   "bayes factor":100,
   "burn-in":1000000,
   "chain-length":2000000,
   "chains":1,
   "concentration":0.5,
   "grid size":20,
   "method":"Variational-Bayes",
   "samples":100
  },
 "site annotations":{
   "headers":{
     "Composition":"Amino acid composition of site",
     "Substitutions":"Substitution history on selected branches"
    },
   "site annotations":{
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      ["I11", ""],
      ["N11", ""],
      ["K11", ""],
      ["F1,L10", ""],
      ["C11", ""],
      ["E11", ""],
      ["D1,E10", "E->D(1)"],
      ["I1,M9,V1", "M->V(1)"],
      ["L11", ""],
      ["D11", ""],
      ["N11", ""],
      ["R11", ""],
      ["A11", ""],
      ["I1,T10", ""],
      ["L11", ""],
      ["Q11", ""]
      ]
    }
  },
 "tested":{
   "0":{
     "EPI_ISL_1181694_HCOV_19_USA_DE_DHSS_B1064373_2021":"test",
     "EPI_ISL_1409773_HCOV_19_ENGLAND_CAMC_141DB08_2021":"test",
     "EPI_ISL_1415264_HCOV_19_INDIA_MH_NCCS_128864_2021":"test",
     "EPI_ISL_1415273_HCOV_19_INDIA_MH_NCCS_87216_2021":"test",
     "EPI_ISL_1416968_HCOV_19_GUADELOUPE_IPP06229_2021":"test",
     "EPI_ISL_1564187_HCOV_19_ENGLAND_CAMC_14D5BFD_2021":"test",
     "EPI_ISL_1583966_HCOV_19_ENGLAND_CAMC_14D1B4C_2021":"test",
     "EPI_ISL_1635400_HCOV_19_SCOTLAND_CAMC_14DEDB2_2021":"test",
     "EPI_ISL_1641831_HCOV_19_GERMANY_BY_RKI_I_076082_2021":"test",
     "EPI_ISL_1648157_HCOV_19_USA_CA_CDC_QDX23571833_2021":"test",
     "EPI_ISL_1652109_HCOV_19_SINGAPORE_565_2021":"test",
     "GB_MT226610_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_CHN_KMS1_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT291831_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_CHN_BEIJING_IME_BJ01_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT380729_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VI_CDC_1999_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT412283_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CT_UW_5772_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT446348_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_LA_BIE_080_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT451046_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC142_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT451174_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC278_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT451724_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC1057_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT460125_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_1105_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT470179_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_FRANCE_40002VJ_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT499218_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_TUN_COV1663_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT512423_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VI_CDC_3688_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT609578_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_0348_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT609579_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_0349_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT612207_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC1606_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT628119_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_1404_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT628199_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_1525_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT642069_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WA_S1116_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT704128_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0028_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT731735_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_BCSIR_NILMRC_137_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT755838_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_BCSIR_NILMRC_245_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT786817_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_IN_QDX_182_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT810119_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_KOR_CNUHV03_CA22_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT810681_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_SEARCH_1240_SAN_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT820487_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_SAU_KAIMRC67_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT825091_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_IRN_COVID19_IRVSH1_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT827207_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0041_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT831570_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WA_S2629_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT834677_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_0519_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT856455_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_BCSIR_NILMRC_306_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT873107_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MA_MGH_00733_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT876607_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_BGD_BCSIR_NILMRC_291_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT890291_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_0812_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT890320_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_0841_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT937322_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0133_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT937823_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0160_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT940476_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_IND_GBRC336_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT956712_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_1102_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT966161_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_0917_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT969815_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC2996_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT971875_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC6260_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT973055_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC6608_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT973439_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_TAS110_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT981432_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_COVID20_0585_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT990449_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_EGY_CU001A_S1_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT992730_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_1113_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MT997720_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MN_MDH_1602_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW012269_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_SRB_NP01_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW030253_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_PER_COVPER022_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW035496_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WI_UW_1327_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW035538_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WI_UW_1372_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW053925_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_UT_02760_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW056173_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_1526_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW064614_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MI_QDX_560_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW065141_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_IL_QDX_1100_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW067706_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_1288_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW067772_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_1293_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW067820_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_COVID20_1113_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW127521_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_SRB_KS_0796_16_04_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW130870_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_WI_CDC_6238_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW134122_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_3285_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW153116_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC7846_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW155687_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC13648_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW156759_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC13581_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW156761_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC13590_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW156992_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC10174_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW181759_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HOMO_SAPIENS_HKG_CASE4999_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW206619_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_FL_BPHL_1798_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW228252_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_NMDOH_2020309735_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW240747_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0283_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW240753_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_MD_MDH_0289_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW276413_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_10909_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW276537_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_11549_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW276545_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_11572_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW276613_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_11950_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW276622_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_11799_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW276661_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_11859_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW276915_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC15878_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW277113_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC12012_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW277234_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC15990_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW277460_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC12022_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW277478_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC16104_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW281864_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_WEST_BANK_JERICHO_SARS_COV_2_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW306408_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_CA_CZB_12385_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW320996_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC17273_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW321295_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_AUS_VIC17192_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW332236_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_RUS_2272_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW338802_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_2062_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW341806_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_IL_UW_1937_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW365025_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_CHL_SANTIAGO_PUC_MVL_0397_2020_SEGMENT_NULL_HOST_HUMAN":"background",
     "GB_MW403680_ORGANISM_SEVERE_ACUTE_RESPIRATORY_SYNDROME_CORONAVIRUS_2_STRAIN_NAME_SARS_COV_2_HUMAN_USA_VA_DCLS_2414_2020_SEGMENT_NULL_HOST_HUMAN":"background",
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 "timers":{
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   "Overall":{
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   "Residue A analysis":{
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   "Residue C analysis":{
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   "Residue D analysis":{
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   "Residue E analysis":{
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    },
   "Residue G analysis":{
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   "Residue H analysis":{
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   "Residue I analysis":{
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    },
   "Residue K analysis":{
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    },
   "Residue L analysis":{
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    },
   "Residue M analysis":{
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    },
   "Residue N analysis":{
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    },
   "Residue P analysis":{
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    },
   "Residue Q analysis":{
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    },
   "Residue R analysis":{
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    },
   "Residue S analysis":{
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    },
   "Residue T analysis":{
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     "timer":8
    },
   "Residue V analysis":{
     "order":21,
     "timer":8
    },
   "Residue W analysis":{
     "order":21,
     "timer":8
    },
   "Residue Y analysis":{
     "order":21,
     "timer":8
    }
  }
}
author	iuc
date	Sat, 27 Nov 2021 11:37:32 +0000
parents	70de001b6768
children