Mercurial > repos > iuc > hyphy_meme

comparison hyphy_meme.xml @ 34:5fd8dc04d6af draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954
author iuc
date Thu, 02 Mar 2023 15:17:27 +0000
parents 5d8389d684bf
children
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33:d5d909979314 34:5fd8dc04d6af
1 <?xml version="1.0"?> 1 <tool id="hyphy_meme" name="HyPhy-MEME" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <tool id="hyphy_meme" name="HyPhy-MEME" version="@TOOL_VERSION@+galaxy2" profile="19.09">
3 <description>Mixed Effects Model of Evolution</description> 2 <description>Mixed Effects Model of Evolution</description>
4 <macros> 3 <macros>
5 <import>macros.xml</import> 4 <import>macros.xml</import>
6 </macros> 5 </macros>
7 <expand macro="bio_tools"/> 6 <expand macro="bio_tools"/>
21 ]]></command> 20 ]]></command>
22 <inputs> 21 <inputs>
23 <expand macro="inputs"/> 22 <expand macro="inputs"/>
24 <expand macro="gencode"/> 23 <expand macro="gencode"/>
25 <expand macro="branches"/> 24 <expand macro="branches"/>
26 <param name="p_value" type="float" value=".1" min="0" max="1" label="P-value threshold"/> 25 <param argument="--pvalue" name="p_value" type="float" value=".1" min="0" max="1" label="P-value threshold"/>
27 <expand macro="resample"/> 26 <expand macro="resample"/>
28 <param argument="--full-model" type="boolean" truevalue="Yes" falsevalue="No" label="Perform branch length re-optimization under the full codon model" /> 27 <param argument="--full-model" type="boolean" truevalue="Yes" falsevalue="No" label="Perform branch length re-optimization under the full codon model" />
29 </inputs> 28 </inputs>
30 <outputs> 29 <outputs>
31 <data name="meme_output" format="hyphy_results.json" /> 30 <data name="meme_output" format="hyphy_results.json" />