diff hyphy_meme.xml @ 32:5d8389d684bf draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"

--- a/hyphy_meme.xml	Sat Nov 27 11:26:48 2021 +0000
+++ b/hyphy_meme.xml	Wed Mar 30 00:22:00 2022 +0000
@@ -1,10 +1,10 @@
 <?xml version="1.0"?>
 <tool id="hyphy_meme" name="HyPhy-MEME" version="@TOOL_VERSION@+galaxy2" profile="19.09">
     <description>Mixed Effects Model of Evolution</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
         @SYMLINK_FILES@
@@ -14,6 +14,7 @@
             --code '$gencodeid'
             @branch_options@
             --pvalue '$p_value'
+            --resample $resample
             --output '$meme_output'
             --full-model '$full_model'
         @ERRORS@
@@ -23,6 +24,7 @@
         <expand macro="gencode"/>
         <expand macro="branches"/>
         <param name="p_value" type="float" value=".1" min="0" max="1" label="P-value threshold"/>
+        <expand macro="resample"/>
         <param argument="--full-model" type="boolean" truevalue="Yes" falsevalue="No" label="Perform branch length re-optimization under the full codon model" />
     </inputs>
     <outputs>