Mercurial > repos > iuc > hyphy_meme
changeset 34:5fd8dc04d6af draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954
| author | iuc |
|---|---|
| date | Thu, 02 Mar 2023 15:17:27 +0000 |
| parents | d5d909979314 |
| children | |
| files | hyphy_meme.xml macros.xml test-data/absrel-in1.fa test-data/absrel-in1.nhx test-data/absrel-out1.json test-data/absrel-out2.json test-data/busted-out1.json test-data/busted-out2-1.json test-data/busted-out2-2.json test-data/conv-out1.nex test-data/relax-in1.nhx test-data/slac-out1.json |
| diffstat | 12 files changed, 17 insertions(+), 7274 deletions(-) [+] |
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--- a/hyphy_meme.xml Thu Aug 18 13:51:18 2022 +0000 +++ b/hyphy_meme.xml Thu Mar 02 15:17:27 2023 +0000 @@ -1,5 +1,4 @@ -<?xml version="1.0"?> -<tool id="hyphy_meme" name="HyPhy-MEME" version="@TOOL_VERSION@+galaxy2" profile="19.09"> +<tool id="hyphy_meme" name="HyPhy-MEME" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>Mixed Effects Model of Evolution</description> <macros> <import>macros.xml</import> @@ -23,7 +22,7 @@ <expand macro="inputs"/> <expand macro="gencode"/> <expand macro="branches"/> - <param name="p_value" type="float" value=".1" min="0" max="1" label="P-value threshold"/> + <param argument="--pvalue" name="p_value" type="float" value=".1" min="0" max="1" label="P-value threshold"/> <expand macro="resample"/> <param argument="--full-model" type="boolean" truevalue="Yes" falsevalue="No" label="Perform branch length re-optimization under the full codon model" /> </inputs>
--- a/macros.xml Thu Aug 18 13:51:18 2022 +0000 +++ b/macros.xml Thu Mar 02 15:17:27 2023 +0000 @@ -1,6 +1,9 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">2.5.36</token> + <token name="@TOOL_VERSION@">2.5.47</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">21.05</token> + <xml name="inputs"> <param name="input_file" type="data" format="fasta,fasta.gz,nex" label="Input FASTA or NEXUS file" help="If the input file type is NEXUS and it includes a valid newick tree, that tree will override an uploaded newick tree" /> <param name="input_nhx" type="data" format="nhx,newick" optional="true" label="Input newick file"/> @@ -10,8 +13,8 @@ <xref type="bio.tools">HyPhy</xref> </xrefs> </xml> - <xml name="substitution"> - <param name="model" type="select" label="Substitution model"> + <xml name="substitution" tokens="argument"> + <param argument="@ARGUMENT@" type="select" label="Substitution model"> <option value="GTR">GTR - General time reversible model</option> <option value="LG">LG - Generalist empirical model from @@ -66,13 +69,13 @@ <xml name="mcmc_options"> <param argument="--chains" type="integer" value="5" min="2" max="20" label="Number of MCMC chains" /> - <param argument="--chain-length" name="chain_length" type="integer" value="2000000" min="500000" max="50000000" label="Length of each chain" /> + <param argument="--chain-length" type="integer" value="2000000" min="500000" max="50000000" label="Length of each chain" /> <param argument="--burn-in" name="samples" type="integer" value="1000000" min="100000" max="1900000" label="Samples to use for burn-in" /> <param argument="--samples" name="samples_per_chain" type="integer" value="100" min="50" max="1000000" label="Samples to draw from each chain" /> </xml> <xml name="gencode"> - <param name="gencodeid" type="select" label="Genetic code"> + <param argument="--code" name="gencodeid" type="select" label="Genetic code"> <option value="Universal">Universal code</option> <option value="Vertebrate-mtDNA">Vertebrate mitochondrial DNA code</option> @@ -119,7 +122,7 @@ <xml name="branches"> <conditional name="branch_cond"> - <param name="branch_sel" type="select" label="Set of branches to test"> + <param argument="--branches" name="branch_sel" type="select" label="Set of branches to test"> <option value="All">All branches</option> <option value="Internal">Internal branches</option> <option value="Leaves">Leaf branches</option> @@ -152,7 +155,7 @@ </requirements> </xml> <xml name="alternative_model_output"> - <data name="alternative_model" format="hyphy_results.json" from_work_dir="alternative_model.json"> + <data name="alternative_model" format="nhx" from_work_dir="alternative_model.nhx" label="${tool.name} on ${on_string}: Alternative model"> <filter>advanced['save_alternative_model']</filter> </data> </xml> @@ -188,7 +191,7 @@ --rates $advanced.rates --srv $advanced.srv #if $advanced.save_alternative_model: - --save-fit alternative_model.json + --save-fit alternative_model.nhx #end if #end if ]]></token>
--- a/test-data/absrel-in1.fa Thu Aug 18 13:51:18 2022 +0000 +++ b/test-data/absrel-in1.fa Thu Mar 02 15:17:27 2023 +0000 @@ -1,20 +1,8 @@ ->Human -AAAGAGATTACGAATGCCTTGGAAACCTGGGGTGCCTTGGGTCAGGACATCAACTTGGACATTCCTAGTTTTCAAATGAGTGATGATATTGACGATATAAAATGGGAAAAAACTTCAGACAAGAAAAAGATTGCACAATTCAGAAAAGAGAAAGAGACTTTCAAGGAAAAAGATACATATAAGCTATTTAAAAATGGAACTCTGAAAATTAAGCAT---CTGAAGACCGATGATCAGGATATCTACAAGGTATCAATATATGATACAAAAGGAAAAAATGTGTTGGAAAAAATATTTGATTTGAAGATTCAAGAGAGGGTCTCAAAACCAAAGATCTCCTGGACTTGTATCAACACAACCCTGACCTGTGAGGTAATGAATGGAACTGACCCCGAATTAAACCTGTATCAAGATGGGAAACATCTAAAA---CTTTCTCAGAGGGTCATCACACACAAGTGGACCACCAGCCTGAGTGCAAAATTCAAGTGCACAGCAGGGAACAAAGTCAGCAAGGAATCCAGTGTCGAGCCTGTCAGCTGTCCAGAGAAAGGTCTGGAC ->Chimp -GAAGAGATTACGAATGCCTTGGAAACCTGGGGTGCCTTGGGTCAGGACATCAACTTGGACATTCCTAGTTTTCAAATGAGTGATGATATTGACGATATAAAATGGGAAAAAACTTCAGACAAGAAAAAGATTGCACAATTCAGAAAAGAGAAAGAGACTTTCAAGGAAAAAGATACATATAAGCTATTTAAAAATGGAACTCTGAAAATTAAGCAT---CTGAAGACCGATGATCAGGATATCTACAAGGTATCAATATATGATACAAAAGGAAAAAATGTGTTGGAAAAAATATTTGATTTGAAGATTCAAGAGAGGGTCTCAAAACCAAAGATCTCCTGGACTTGTATCAACACAACCCTGACCTGTGAGGTAATGAATGGAACTGACCCCGAATTAAACCTGTATCAAGATGGGAAACATCTAAAA---CTTTCTCAGAGGGTCATCACACACAAGTGGACCACCAGCCTGAGTGCAAAATTCAAGTGCACAGCAGGGAACAAAGTCAGCAAGGAATCCAGTGTCGAGCCTGTCAGCTGTCCAGAGAAAGGTCTGGAC >Baboon AAAGAGATTAGGAATGCTTTGGAAACCTGGGGAGCGCTGGGTCAGGACATCGACTTGGACATTCCTAGTTTTCAAATGAGTGATGATATTGATGATATAAAATGGGAGAAAACTTCAGACAAGAAAAAGATTGCACAATTCAGAAAAGAGAAGGAGACTTTCGAGGAAAAAGATGCATATAAGCTATTTAAAAACGGAACTCTGAAAATTAAGCAT---CTGAAGATCCATGATCAGGATAGCTACAAGGTATCAATATACGATACAAAAGGAAAAAATGTGTTGGAAAAAACATTTGATTTGAAGATTCAAGAGAGGGTCTCAGAACCAAAGATCTCCTGGACTTGTATCAACACAACCCTGACCTGTGAAGTAATGAATGGAACTGACCCCGAATTAAACCTGTATCAAGATGGGAAACATCTAAAA---CTTTCTCAGAGGGTCATCACACACAAGTGGACCACCAGCCTGAGTGCGAAATTCAAGTGCACAGCAGGGAACAAAGTCAGCAAGGAATCCAGGATGGAGACTGTCAGCTGTCCAGAGAAAGGTCTGGAC ->RhMonkey -AAAGAGATTAGGAATGCTTTGGAAACCTGGGGAGCGCTGGGTCAGGACATCGACTTGGACATTCCTAGTTTTCAAATGAGTGATGATATTGATGATATAAGATGGGAAAAAACTTCAGACAAGAAAAAGATTGCACAATTCAGAAAAGAGAAGGAGACTTTCGAGGAAAAAGATGCATATAAGCTATTTAAAAACGGAACTCTGAAAAYTAAGCAT---CTGAAGATCCATGATCAGGATAGCTACAAGGTATCAATATACGATACAAAAGGAAAAAATGTGTTGGAAAAAACATTTGATTTGAAGATTCAAGAGAGGGTCTCAGAACCAAAGATCTCCTGGACTTGTATCAACACAACCCTGACCTGTGAAGTAATGAATGGAACTGRCCCCGAATTAAACCTGTATCAAGATGGGAAACATGTAAAA---CTTTCTCAGAGGGTCATCACACACAAGTGGACCACCAGCCTGAGTGCGAAATTCAAGTGCACAGCAGGGAACAAAGTCAGCAAGGAATCCAGGATGGAGACTGTCAGCTGTCCAGAGAAAGGTCTGGAC >Cow ------------GAAAGCATTGTCGTCTGGGGTGCCCTGGATCATGACCTCAACCTGGACATTCCTGGTTTTCCAAGAAGTGATATAGTGGCAGATATAAAATGGAACAGA------AACAAAAACAAGATTGCACGAATAAAGAAAGATATGCCACTTCACAATGAAATGGACAAATATGATATGTTTACAAATGGAACTCTGAAAATTAAAACT---CTGATGAGAAACGATAGTGGTCTCTATGAGGTAGAGGTTTATGATTCAAATGGAGTAAACCTACTGAGCAAAAAATTTGATTTGAAGATTCAAGAGATGCTCTCAGGACCTGAAATTAACTGGATCTGTACCAACAGAACTGTGAGCTGCAAGGTAGAAAATGGAAGTAATCCTAAATTACAACTGTTTTTAAATACGACCCGTGTCAAACAAGATCATGGGAAGCTCATCACCTACACGTGGAACACCAGATGGAATAAAACATTCAAGTGCGTGGCGAGTAACCATGTCGATAGCAAAGTCAGCATAGAGATCGCCGTGTGTCCAGATGAAGGTCTGGAT >Pig ---------------ACTGAGGTTGTCTGGGGCATCGTGGATCAAGACATCAACCTGGACATTCCTGAACTTTCAAAACATGATAACGTAGATCATATACGATGGCAGAAG------AATGAAAACAAGATCGCAGAATTTAAAAAAAACAAAGAAACTCACCCTGTGAAAGACACATACATGATGTTACCAAATGGAACTCTGAGAATTAAAGAT---CTGAAGAGAGATGATGAGGGTATCTACAAGGTAACTGTCTATGCTACGGATGGAAAACACATGCTGGAGAGAAAATTTGATTTGCCGATTCTAGATGGGGTCTCAAAACCTGTAATCTCCTGGAGCTGTGCCGACAAAACGGTGACCTGTGAGGTAGCAGAAGGAAGTGACCCTAAGTTAAAACTGTATGTAAATAAGTCCACTGCCAGAGAAGGTCGTCAGAAGGTCATCCTGTGGAAGTGGAACACCAAATGGAGCACATTATTCAAGTGTGTGGCCAGTAACAACGCCAGTGAGCAAATCAGCATGGTGACCATCAGTTGTACGGGGCAAGGTCTGGAT ->Horse -------------AAGAATATCACCATCTTGGGTGCCCTGGAACGTGATATCAACCTGGACATTCCTGCTTTTCAAATGAGTGAGCATGTAGAAGATATACAATGGAGCAAA------GGAAAAACCAAGATTGCAAAATTCAAAAATGGCAGTATGACTTTCCAGAAAGATAAAACATACGAGGTATTAAAAAATGGAACTCTGAAAATTAAACAT---CTGGAGAGAATTCATGAAGGTACCTACAAGGTAGACGCATATGATAGTGATGGAAAAAATGTGTTGGAGGAAACATTTCATTTGAGCCTTCTAGAGATGGTCTCAAAACCTAATATCTCCTGGAGCTGCACCAACACCACCCTGACCTGCGAGGTGACAAAAGGAACTGACTTTGAGTTAAAACTCTATCTAAATGGGAGAATGATCCAAAAAAGTCCTCGCAAAGTCATCGTATACAAGCGGGCCAGCAACCAAATTGCGTCCTTCAAGTGCACAGCCAATAACACAGTCAGCGAGGAAAGCAGCTCTGTGGTCATCAGGTGTACAGAGAAAGGTCTGGAT ->Cat ----------GCAAATGATGATATCGTCTGGGGTACCCTGGGTCAGGACATCAACCTGGACATTCCTGATTCTCAA---GGGATTAATATAGATGATATACACTGGGAAAAA------GGCAAGAAGAAGGTGGCGAGGTTCCAAATTAGCAACAAGCCTAAGAATCCAGATGAAAAATATAATGTGTCAATGAATGGAACTCTGAAAATTAAACAT---CTGATGCTAGAAGACTGCGATACCTACAAGGTTGTTATATACGATAAGGATGGAAAGAATGTGTTGGATAAAACATTTCAGCTGAAGATTCAAGAGAAGGTCTCAACGCCTAACATCGACTGGAATTGTATCAACAAAACCCTGGTCTGTAAGGTATCAAATGGAACAGACCCTGAATTAAAACTGTACGTAAATGGGACCAGTATCAAGCCCGTTTCTTCGAAGTTCAGCACATACAGGTTTATAAACAAGCAGAAGATATTAGTCAACTGCACGGCAGAAAACAAAGTCAGCAAGGAAAGCGACGTGAAGATGATCACTTGTTCAGAGAAGGGTCTGGAC ->Mouse ----------AGAGACAATGAGACCATCTGGGGTGTCTTGGGTCATGGCATCACCCTGAACATCCCCAACTTTCAAATGACTGATGATATTGATGAGGTGCGATGGGTAAGG------AGGGGCACCCTGGTCGCAGAGTTTAAAAGGAAGAAGCCACCTTTTTTGATATCAGAAACGTATGAGGTCTTAGCAAACGGATCCCTGAAGATAAAGAAGCCGATGATGAGAAACGACAGTGGCACCTATAATGTAATGGTGTATGGCACAAATGGGATGACTAGGCTGGAGAAGGACCTGGACGTGAGGATTCTGGAGAGGGTCTCAAAGCCCATGATCCACTGGGAATGCCCCAACACAACCCTGACCTGTGCGGTCTTGCAAGGGACAGATTTTGAACTGAAGCTGTATCAAGGGGAAACACTACTCAATAGTCTCCCCCAGAAGAACATGAGTTACCAGTGG---ACCAACCTGAACGCACCATTCAAGTGTGAGGCGATAAACCCGGTCAGCAAGGAGTCTAAGATGGAAGTTGTTAACTGTCCAGAGAAAGGTCTGTCC >Rat ---------AGAGACAGTGGGACCGTCTGGGGTGCCCTGGGTCATGGCATCAACCTGAACATCCCTAACTTTCAAATGACTGATGATATTGATGAGGTGCGATGGGAGAGG------GGGAGCACCCTGGTTGCCGAGTTTAAAAGGAAGATGAAGCCTTTTTTGAAATCGGGAGCATTTGAGATCTTAGCAAATGGAGACTTGAAGATAAAGAAT---CTGACAAGAGATGACAGTGGCACCTATAATGTAACGGTATACAGCACAAATGGGACACGTATCCTGGACAAGGCACTGGACTTGAGGATTCTAGAGATGGTCTCAAAGCCGATGATCTACTGGGAGTGCAGCAACGCAACCCTGACCTGTGAGGTCTTGGAAGGAACAGATGTTGAACTAAAGCTGTACCAAGGAAAGGAGCATCTCAGGAGCCTCCGTCAGAAGACCATGAGTTACCAGTGG---ACCAACCTGAGAGCACCGTTTAAGTGCAAGGCGGTAAACAGGGTCAGCCAGGAGTCTGAGATGGAAGTTGTCAACTGTCCAGAGAAAGGTCTGCCC
--- a/test-data/absrel-in1.nhx Thu Aug 18 13:51:18 2022 +0000 +++ b/test-data/absrel-in1.nhx Thu Mar 02 15:17:27 2023 +0000 @@ -1,1 +1,1 @@ -((((Pig:0.147969,Cow:0.213430):0.085099,Horse:0.165787,Cat:0.264806):0.058611,((RhMonkey:0.002015,Baboon:0.003108):0.022733,(Human:0.004349,Chimp:0.000799):0.011873):0.101856):0.340802,Rat:0.050958,Mouse:0.097950); \ No newline at end of file +(((Pig:0.147969,Cow:0.21343):0.085099,Baboon:0.011873):0.340802,Rat:0.050958);
--- a/test-data/absrel-out1.json Thu Aug 18 13:51:18 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,478 +0,0 @@ -{ - "analysis":{ - "authors":"Sergei L Kosakovsky Pond, Ben Murrell, Steven Weaver and Temple iGEM / UCSD viral evolution group", - "citation":"Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection (2015). Mol Biol Evol 32 (5): 1342-1353. v2.2 adds support for multiple-hit models", - "contact":"spond@temple.edu", - "info":"aBSREL (Adaptive branch-site random effects likelihood)\n uses an adaptive random effects branch-site model framework\n to test whether each branch has evolved under positive selection,\n using a procedure which infers an optimal number of rate categories per branch.", - "requirements":"in-frame codon alignment and a phylogenetic tree", - "version":"2.2" - }, - "branch attributes":{ - "0":{ - "Baboon":{ - "Baseline MG94xREV":0.001816807585564731, - "Baseline MG94xREV omega ratio":0, - "Corrected P-value":1, - "Full adaptive model":0.001810407118394509, - "LRT":0, - "Nucleotide GTR":0.001678881906620672, - "Rate Distributions": [ -[0, 1] - ], - "Rate classes":1, - "Uncorrected P-value":1, - "original name":"Baboon", - "rate at which 2 nucleotides are changed instantly within a single codon":0 - }, - "Cat":{ - "Baseline MG94xREV":0.2286001363527903, - "Baseline MG94xREV omega ratio":1.403298474422089, - "Corrected P-value":1, - "Full adaptive model":0.1219386838393392, - "LRT":1.644967676056694, - "Nucleotide GTR":0.265904547400163, - "Rate Distributions": [ -[0.2130519766306851, 0.6352283641519592], - [2.628217450705319, 0.3647716358480408] - ], - "Rate classes":2, - "Uncorrected P-value":0.171730764045231, - "original name":"Cat", - "rate at which 2 nucleotides are changed instantly within a single codon":0 - }, - "Chimp":{ - "Baseline MG94xREV":0.001840311209746262, - "Baseline MG94xREV omega ratio":10000000000, - "Corrected P-value":1, - "Full adaptive model":0.001841979303044237, - "LRT":0.6159123786974305, - "Nucleotide GTR":0.001816713800925801, - "Rate Distributions": [ -[10000000000, 1] - ], - "Rate classes":1, - "Uncorrected P-value":0.3069983227523322, - "original name":"Chimp", - "rate at which 2 nucleotides are changed instantly within a single codon":0 - }, - "Cow":{ - "Baseline MG94xREV":0.2070244948790512, - "Baseline MG94xREV omega ratio":2.153434974462683, - "Corrected P-value":0.5006146299996015, - "Full adaptive model":0.1241125417707662, - "LRT":4.898194538953248, - "Nucleotide GTR":0.2481512612523618, - "Rate Distributions": [ -[0, 0.52318726440949], - [2.444056517734385, 0.47681273559051] - ], - "Rate classes":2, - "Uncorrected P-value":0.03128841437497509, - "original name":"Cow", - "rate at which 2 nucleotides are changed instantly within a single codon":0 - }, - "Horse":{ - "Baseline MG94xREV":0.190365915457708, - "Baseline MG94xREV omega ratio":1.182933895494305, - "Corrected P-value":1, - "Full adaptive model":0.0869489794025302, - "LRT":2.047309801283518, - "Nucleotide GTR":0.2090927256979082, - "Rate Distributions": [ -[0, 0.5397658078247131], - [1.633257246666139, 0.4602341921752869] - ], - "Rate classes":2, - "Uncorrected P-value":0.1382789032066179, - "original name":"Horse", - "rate at which 2 nucleotides are changed instantly within a single codon":0 - }, - "Human":{ - "Baseline MG94xREV":0, - "Baseline MG94xREV omega ratio":1, - "Corrected P-value":1, - "Full adaptive model":0, - "LRT":0, - "Nucleotide GTR":0, - "Rate Distributions": [ -[1, 1] - ], - "Rate classes":1, - "Uncorrected P-value":1, - "original name":"Human", - "rate at which 2 nucleotides are changed instantly within a single codon":0.0006106118725184574 - }, - "Mouse":{ - "Baseline MG94xREV":0.1083167307250788, - "Baseline MG94xREV omega ratio":0.5108576904540283, - "Corrected P-value":1, - "Full adaptive model":0.1078010043714489, - "LRT":0, - "Nucleotide GTR":0.1181001275359051, - "Rate Distributions": [ -[0.5087375113796073, 1] - ], - "Rate classes":1, - "Uncorrected P-value":1, - "original name":"Mouse", - "rate at which 2 nucleotides are changed instantly within a single codon":0.4244832903005548 - }, - "Node1":{ - "Baseline MG94xREV":0.2542393300501047, - "Baseline MG94xREV omega ratio":0.2997498382776075, - "Corrected P-value":1, - "Full adaptive model":0.2550466752020236, - "LRT":0, - "Nucleotide GTR":0.2767426965701868, - "Rate Distributions": [ -[0.2932817609633239, 1] - ], - "Rate classes":1, - "Uncorrected P-value":1, - "rate at which 2 nucleotides are changed instantly within a single codon":0.9114373463003921 - }, - "Node12":{ - "Baseline MG94xREV":0.01400815185374474, - "Baseline MG94xREV omega ratio":0.2754467062829232, - "Corrected P-value":1, - "Full adaptive model":0.01437973904273591, - "LRT":0, - "Nucleotide GTR":0.01784721909304638, - "Rate Distributions": [ -[0.3037614070859027, 1] - ], - "Rate classes":1, - "Uncorrected P-value":1, - "rate at which 2 nucleotides are changed instantly within a single codon":0.5084909616267814 - }, - "Node2":{ - "Baseline MG94xREV":0.0400106272595141, - "Baseline MG94xREV omega ratio":0.116408812566168, - "Corrected P-value":1, - "Full adaptive model":0.03991940069030483, - "LRT":0, - "Nucleotide GTR":0.06613304839358287, - "Rate Distributions": [ -[0.1193993042178124, 1] - ], - "Rate classes":1, - "Uncorrected P-value":1, - "rate at which 2 nucleotides are changed instantly within a single codon":9.28646275825122 - }, - "Node3":{ - "Baseline MG94xREV":0.08548068002443369, - "Baseline MG94xREV omega ratio":1.293385437932658, - "Corrected P-value":1, - "Full adaptive model":0.08590119038008139, - "LRT":0.1383887036890883, - "Nucleotide GTR":0.09881178513658169, - "Rate Distributions": [ -[1.330576641567385, 1] - ], - "Rate classes":1, - "Uncorrected P-value":0.4219212196398351, - "rate at which 2 nucleotides are changed instantly within a single codon":0.8390789546113498 - }, - "Node8":{ - "Baseline MG94xREV":0.09463393920061362, - "Baseline MG94xREV omega ratio":1.862136443854597, - "Corrected P-value":1, - "Full adaptive model":0.0958035263641453, - "LRT":0.7150293976401372, - "Nucleotide GTR":0.1062333225692588, - "Rate Distributions": [ -[1.883870769808856, 1] - ], - "Rate classes":1, - "Uncorrected P-value":0.2893795680778183, - "rate at which 2 nucleotides are changed instantly within a single codon":0.512238843416092 - }, - "Node9":{ - "Baseline MG94xREV":0.02846111726225027, - "Baseline MG94xREV omega ratio":0.4321055128385307, - "Corrected P-value":1, - "Full adaptive model":0.02810856974543091, - "LRT":0, - "Nucleotide GTR":0.02566185438854229, - "Rate Distributions": [ -[0.4185836885800617, 1] - ], - "Rate classes":1, - "Uncorrected P-value":1, - "rate at which 2 nucleotides are changed instantly within a single codon":0 - }, - "Pig":{ - "Baseline MG94xREV":0.1782835053555321, - "Baseline MG94xREV omega ratio":1.275728452678247, - "Corrected P-value":1, - "Full adaptive model":0.1729188354138871, - "LRT":0.3324036585026988, - "Nucleotide GTR":0.1871760137183495, - "Rate Distributions": [ -[1.235108129487059, 1] - ], - "Rate classes":1, - "Uncorrected P-value":0.3669120164240152, - "original name":"Pig", - "rate at which 2 nucleotides are changed instantly within a single codon":0.1143447431158695 - }, - "Rat":{ - "Baseline MG94xREV":0.06315403896300904, - "Baseline MG94xREV omega ratio":0.8744850915248316, - "Corrected P-value":1, - "Full adaptive model":0.06408078523886611, - "LRT":0, - "Nucleotide GTR":0.0666364425850592, - "Rate Distributions": [ -[0.8782045320352186, 1] - ], - "Rate classes":1, - "Uncorrected P-value":1, - "original name":"Rat", - "rate at which 2 nucleotides are changed instantly within a single codon":0.1346164190615118 - }, - "RhMonkey":{ - "Baseline MG94xREV":0.003671939837747083, - "Baseline MG94xREV omega ratio":10000000000, - "Corrected P-value":1, - "Full adaptive model":0.003675047654636179, - "LRT":1.165062770327495, - "Nucleotide GTR":0.003777016173741061, - "Rate Distributions": [ -[10000000000, 1] - ], - "Rate classes":1, - "Uncorrected P-value":0.2236284592802686, - "original name":"RhMonkey", - "rate at which 2 nucleotides are changed instantly within a single codon":0 - } - }, - "attributes":{ - "Baseline MG94xREV":{ - "attribute type":"branch length", - "display order":1 - }, - "Baseline MG94xREV omega ratio":{ - "attribute type":"branch label", - "display order":1 - }, - "Corrected P-value":{ - "attribute type":"branch label", - "display order":6 - }, - "Full adaptive model":{ - "attribute type":"branch length", - "display order":2 - }, - "LRT":{ - "attribute type":"branch label", - "display order":4 - }, - "Nucleotide GTR":{ - "attribute type":"branch length", - "display order":0 - }, - "Rate Distributions":{ - "attribute type":"branch label", - "display order":3 - }, - "Rate classes":{ - "attribute type":"branch label", - "display order":2 - }, - "Uncorrected P-value":{ - "attribute type":"branch label", - "display order":5 - }, - "original name":{ - "attribute type":"node label", - "display order":-1 - }, - "rate at which 2 nucleotides are changed instantly within a single codon":{ - "attribute type":"branch label", - "display order":7 - } - } - }, - "data partitions":{ - "0":{ - "coverage": [ -[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186] - 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}, - "Preliminary model fitting":{ - "order":1, - "timer":0 - }, - "Testing for selection":{ - "order":5, - "timer":112 - } - } -} \ No newline at end of file
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], - "analysis":{ - "authors":"Sergei L Kosakovsky Pond, Ben Murrell, Steven Weaver and Temple iGEM / UCSD viral evolution group", - "citation":"Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection (2015). Mol Biol Evol 32 (5): 1342-1353. v2.2 adds support for multiple-hit models. v2.3 adds support for SRV", - "contact":"spond@temple.edu", - "info":"aBSREL (Adaptive branch-site random effects likelihood)\n uses an adaptive random effects branch-site model framework\n to test whether each branch has evolved under positive selection,\n using a procedure which infers an optimal number of rate categories per branch.", - "requirements":"in-frame codon alignment and a phylogenetic tree", - "version":"2.3" - }, - "branch attributes":{ - "0":{ - "Baboon":{ - "Baseline MG94xREV":0.001882994109917251, - "Baseline MG94xREV omega ratio":0, - "Corrected P-value":1, - "Full adaptive model":0.001888788495524889, - "Full adaptive model (non-synonymous subs/site)":1e-10, - "Full adaptive model (synonymous subs/site)":0.001888788495524889, - "LRT":0, - "Nucleotide GTR":0.001685167654714891, - "Rate Distributions": [ -[0, 1] - ], - "Rate classes":1, - "Uncorrected P-value":1, - "original name":"Baboon", - 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], - "analysis":{ - "authors":"Sergei L Kosakovsky Pond", - "citation":"*Gene-wide identification of episodic selection*, Mol Biol Evol. 32(5):1365-71", - "contact":"spond@temple.edu", - "info":"BUSTED (branch-site unrestricted statistical test of episodic diversification) uses a random effects branch-site model fitted \njointly to all or a subset of tree branches in order to test for alignment-wide evidence of episodic diversifying selection. \nAssuming there is evidence of positive selection (i.e. there is an omega > 1), BUSTED will also perform a quick evidence-ratio \nstyle analysis to explore which individual sites may have been subject to selection. v2.0 adds support for synonymous rate variation, \nand relaxes the test statistic to 0.5 (chi^2_0 + chi^2_2). Version 2.1 adds a grid search for the initial starting point.\nVersion 2.2 changes the grid search to LHC, and adds an initial search phase to use adaptive Nedler-Mead. Version 3.0 implements the option\nfor branch-site variation in synonymous substitution rates. Version 3.1 adds HMM auto-correlation option for SRV, and binds SRV distributions for multiple branch sets\n", - "requirements":"in-frame codon alignment and a phylogenetic tree (optionally annotated with {})", - "version":"3.1" - }, - "background":0, - "branch attributes":{ - "0":{ - "Baboon":{ - "MG94xREV with separate rates for branch sets":0.001772434847524003, - "Nucleotide GTR":0.001680040630127455, - "constrained":0.001513413708231178, - "original name":"Baboon", - "unconstrained":0.00161713005248515 - }, - "Cat":{ - "MG94xREV with separate rates for branch sets":0.2735065373507703, - "Nucleotide GTR":0.2660909938917123, - "constrained":0.3466844629529476, - "original name":"Cat", - "unconstrained":0.3607268493024173 - }, - "Chimp":{ - "MG94xREV with separate rates for branch sets":0.001828401123834132, - "Nucleotide GTR":0.001818373670119325, - "constrained":0.001854421055569225, - "original name":"Chimp", - "unconstrained":0.001853794709397617 - }, - "Cow":{ - "MG94xREV with separate rates for branch sets":0.2477981038577003, - 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} - } - }, - "data partitions":{ - "0":{ - "coverage": [ -[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186] - ], - "name":"busted.filter.default" - } - }, - "fits":{ - "Constrained model":{ - "AIC-c":6918.865252134614, - "Log Likelihood":-3419.580167050914, - 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}, - "display order":0, - "estimated parameters":24 - }, - "Unconstrained model":{ - "AIC-c":6910.776988890891, - "Log Likelihood":-3414.491829601268, - "Rate Distributions":{ - "Synonymous site-to-site rates":{ - "0":{ - "proportion":0.2655037162058198, - "rate":0.2749303122566129 - }, - "1":{ - "proportion":0.6321791898264187, - "rate":0.9740711294478059 - }, - "2":{ - "proportion":0.1023170939677615, - "rate":3.041695877803997 - } - }, - "Test":{ - "0":{ - "omega":0, - "proportion":0.386646389823596 - }, - "1":{ - "omega":0.9964438830494696, - "proportion":0 - }, - "2":{ - "omega":1.876622752045829, - "proportion":0.613353610176404 - } - } - }, - "display order":2, - "estimated parameters":40 - } - }, - "input":{ - "file name":"/tmp/tmpfqvtss8b/job_working_directory/000/3/working/./input.fasta", - "number of sequences":10, - "number of sites":187, - "partition count":1, - "trees":{ - "0":"((((Pig:0.147969,Cow:0.21343)Node3:0.08509899999999999,Horse:0.165787,Cat:0.264806)Node2:0.058611,((RhMonkey:0.002015,Baboon:0.003108)Node9:0.022733,(Human:0.004349,Chimp:0.000799)Node12:0.011873)Node8:0.101856)Node1:0.340802,Rat:0.050958,Mouse:0.09795)" - } - }, - "test results":{ - "LRT":10.17667489929045, - "p-value":0.003084133210483175 - }, - "tested":{ - "0":{ - "Baboon":"test", - "Cat":"test", - "Chimp":"test", - "Cow":"test", - "Horse":"test", - "Human":"test", - "Mouse":"test", - "Node1":"test", - "Node12":"test", - "Node2":"test", - "Node3":"test", - "Node8":"test", - "Node9":"test", - "Pig":"test", - "Rat":"test", - "RhMonkey":"test" - } - }, - "timers":{ - "Constrained BUSTED model fitting":{ - "order":3, - "timer":70 - }, - "Overall":{ - "order":0, - "timer":451 - }, - "Preliminary model fitting":{ - "order":1, - "timer":10 - }, - "Unconstrained BUSTED model fitting":{ - "order":2, - "timer":370 - } - } -} \ No newline at end of file
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-5.746662416043704] - ] - }, - "analysis":{ - "authors":"Sergei L Kosakovsky Pond", - "citation":"*Gene-wide identification of episodic selection*, Mol Biol Evol. 32(5):1365-71", - "contact":"spond@temple.edu", - "info":"BUSTED (branch-site unrestricted statistical test of episodic diversification) uses a random effects branch-site model fitted \njointly to all or a subset of tree branches in order to test for alignment-wide evidence of episodic diversifying selection. \nAssuming there is evidence of positive selection (i.e. there is an omega > 1), BUSTED will also perform a quick evidence-ratio \nstyle analysis to explore which individual sites may have been subject to selection. v2.0 adds support for synonymous rate variation, \nand relaxes the test statistic to 0.5 (chi^2_0 + chi^2_2). Version 2.1 adds a grid search for the initial starting point.\nVersion 2.2 changes the grid search to LHC, and adds an initial search phase to use adaptive Nedler-Mead. Version 3.0 implements the option\nfor branch-site variation in synonymous substitution rates. Version 3.1 adds HMM auto-correlation option for SRV, and binds SRV distributions for multiple branch sets\n", - "requirements":"in-frame codon alignment and a phylogenetic tree (optionally annotated with {})", - "version":"3.1" - }, - "background":1, - "branch attributes":{ - "0":{ - "B_FR_83_HXB2":{ - "MG94xREV with separate rates for branch sets":0.0124534911696585, - "Nucleotide GTR":0.01178680392701259, - "constrained":0.0133332678009897, - "original name":"B_FR_83_HXB2", - "unconstrained":0.01333097793183841 - }, - "B_US_83_RF":{ - "MG94xREV with separate rates for branch sets":0.02861194347570897, - "Nucleotide GTR":0.02637179869727959, - "constrained":0.03221962988361129, - "original name":"B_US_83_RF", - "unconstrained":0.03256468480049571 - }, - "B_US_86_JRFL":{ - "MG94xREV with separate rates for branch sets":0.01907096200225401, - "Nucleotide GTR":0.01766254318226218, - "constrained":0.0202680273768515, - "original name":"B_US_86_JRFL", - "unconstrained":0.02050998211592096 - }, - "B_US_90_WEAU160":{ - "MG94xREV with separate rates for branch sets":0.0228124185259555, - "Nucleotide GTR":0.0208836028381146, - "constrained":0.02350080060535386, - "original name":"B_US_90_WEAU160", - "unconstrained":0.03169576721730974 - }, - "D_CD_83_ELI":{ - "MG94xREV with separate rates for branch sets":0.02096580136021227, - "Nucleotide GTR":0.01905599613120992, - "constrained":0.02146725583386667, - "original name":"D_CD_83_ELI", - "unconstrained":0.02163106296740794 - }, - "D_CD_83_NDK":{ - "MG94xREV with separate rates for branch sets":0.01029979658511127, - "Nucleotide GTR":0.009776698714183414, - "constrained":0.01035332290986223, - "original name":"D_CD_83_NDK", - "unconstrained":0.01033266120816073 - }, - "D_CD_84_84ZR085":{ - "MG94xREV with separate rates for branch sets":0.0311654066957857, - "Nucleotide GTR":0.02822254903672137, - "constrained":0.03323755030380494, - "original name":"D_CD_84_84ZR085", - "unconstrained":0.03361093648063813 - }, - "D_UG_94_94UG114":{ - 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"unconstrained":0.01374972129226249 - }, - "Node9":{ - "MG94xREV with separate rates for branch sets":0.005568732807049801, - "Nucleotide GTR":0.004986123424162501, - "constrained":0.00559084970119209, - "unconstrained":0.005669013080318036 - } - }, - "attributes":{ - "MG94xREV with separate rates for branch sets":{ - "attribute type":"branch length", - "display order":1 - }, - "Nucleotide GTR":{ - "attribute type":"branch length", - "display order":0 - }, - "constrained":{ - "attribute type":"branch length", - "display order":1 - }, - "original name":{ - "attribute type":"node label", - "display order":0 - }, - "unconstrained":{ - "attribute type":"branch length", - "display order":0 - } - } - }, - "data partitions":{ - "0":{ - "coverage": [ -[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376, 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415, 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439] - ], - "name":"busted.filter.default" - } - }, - "fits":{ - "Constrained model":{ - "AIC-c":6401.571605880178, - "Log Likelihood":-3164.403373999521, - "Rate Distributions":{ - "Background":{ - "0":{ - "omega":0.1702532607798455, - "proportion":0.8127334552706815 - }, - "1":{ - "omega":0.2017838473060485, - "proportion":0.1774848965120759 - }, - "2":{ - "omega":13.15236788524238, - "proportion":0.00978164821724258 - } - }, - "Test":{ - "0":{ - "omega":0, - "proportion":0.8358903801628909 - }, - "1":{ - "omega":1, - "proportion":0.1436055877954064 - }, - "2":{ - "omega":1, - "proportion":0.02050403204170275 - } - } - }, - "display order":3, - "estimated parameters":36 - }, - "MG94xREV with separate rates for branch sets":{ - "AIC-c":6410.490466219016, - "Equilibrium frequencies": [ -[0.07535940345366139], - [0.01443006409728228], - [0.02915821068672351], - [0.02954870567752823], - [0.03219408024958758], - [0.006164627375802654], - [0.01245659774045292], - [0.01262342001471309], - [0.0276793164843978], - [0.005300125700761717], - [0.01070973633984303], - [0.01085316415297191], - [0.0418125103783387], - [0.008006395714089126], - [0.01617817990958604], - [0.0163948426631036], - [0.0409913146415633], - [0.007849150478922548], - [0.01586044121725868], - [0.01607284872448998], - [0.01751178502783737], - [0.003353213651232053], - [0.006775694789785172], - [0.006866436807635995], - [0.01505600521072376], - [0.002882972930821469], - [0.005825499564956559], - [0.005903516300053625], - [0.02274367484777162], - [0.004355032959661065], - [0.008800028033786655], - [0.008917880494044083], - [0.06143704799998004], - [0.01176416611541591], - [0.0237713451467977], - [0.0240896977132239], - [0.0262463496652457], - [0.005025736545566795], - [0.01015528996016046], - [0.01029129247081581], - [0.02256567087217255], - [0.004320948178469224], - [0.008731154380523415], - [0.00884808446536876], - [0.034087812394816], - [0.006527245376826684], - [0.01318932435908579], - [0.01336595951511979], - [0.01178447449308153], - [0.02413128354890585], - [0.0262916585104385], - [0.005034412430862358], - [0.01017282094890981], - [0.01030905823951665], - [0.004328407393735399], - [0.008746226896405704], - [0.008863358836639712], - [0.03414665788893068], - [0.006538513303760755], - [0.0132120929750345], - [0.01338903305480236] - ], - "Log Likelihood":-3175.995949441886, - "Rate Distributions":{ - "non-synonymous/synonymous rate ratio for *background*": [ -[0.2379324068936849, 1] - ], - "non-synonymous/synonymous rate ratio for *test*": [ -[0.1777604776475358, 1] - ] - }, - "display order":1, - "estimated parameters":29 - }, - "Nucleotide GTR":{ - "AIC-c":6683.094244259512, - "Equilibrium frequencies": [ -[0.4044507575757576], - [0.1662878787878788], - [0.2095643939393939], - [0.2196969696969697] - ], - "Log Likelihood":-3320.503280793639, - "Rate Distributions":{ - "Substitution rate from nucleotide A to nucleotide C":0.1815218119292989, - "Substitution rate from nucleotide A to nucleotide G":1, - "Substitution rate from nucleotide A to nucleotide T":0.08433479296165451, - "Substitution rate from nucleotide C to nucleotide G":0.1775869374255926, - "Substitution rate from nucleotide C to nucleotide T":1.184827038118431, - "Substitution rate from nucleotide G to nucleotide T":0.04288318031815568 - }, - "display order":0, - "estimated parameters":21 - }, - "Unconstrained model":{ - "AIC-c":6400.149223170942, - "Log Likelihood":-3162.670820660715, - "Rate Distributions":{ - "Background":{ - "0":{ - "omega":0.1679188282558003, - "proportion":0.8207520434237199 - }, - "1":{ - "omega":0.2120937673953722, - "proportion":0.1693698006934513 - }, - "2":{ - "omega":13.84252711122189, - "proportion":0.00987815588282877 - } - }, - "Test":{ - "0":{ - "omega":0.08367159828032572, - "proportion":0.9533274940567786 - }, - "1":{ - "omega":0.2493792697064242, - "proportion":0.03716922067476962 - }, - "2":{ - "omega":34.20463703717275, - "proportion":0.009503285268451747 - } - } - }, - "display order":2, - "estimated parameters":37 - } - }, - "input":{ - "file name":"/tmp/tmpfzf3u9m4/job_working_directory/000/2/working/./input.nex", - "number of sequences":8, - "number of sites":440, - "partition count":1, - "trees":{ - "0":"((((D_CD_83_ELI,D_CD_83_NDK)Node3,D_UG_94_94UG114)Node2,D_CD_84_84ZR085)Node1,B_US_83_RF,((B_FR_83_HXB2,B_US_86_JRFL)Node10,B_US_90_WEAU160)Node9)" - } - }, - "test results":{ - "LRT":3.465106677611402, - "p-value":0.08841616008911996 - }, - "tested":{ - "0":{ - "B_FR_83_HXB2":"background", - "B_US_83_RF":"background", - "B_US_86_JRFL":"background", - "B_US_90_WEAU160":"test", - "D_CD_83_ELI":"background", - "D_CD_83_NDK":"background", - "D_CD_84_84ZR085":"background", - "D_UG_94_94UG114":"background", - "Node1":"background", - "Node10":"background", - "Node2":"background", - "Node3":"background", - "Node9":"background" - } - }, - "timers":{ - "Constrained BUSTED model fitting":{ - "order":3, - "timer":14 - }, - "Overall":{ - "order":0, - "timer":60 - }, - "Preliminary model fitting":{ - "order":1, - "timer":3 - }, - "Unconstrained BUSTED model fitting":{ - "order":2, - "timer":40 - } - } -} \ No newline at end of file
--- a/test-data/busted-out2-2.json Thu Aug 18 13:51:18 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3395 +0,0 @@ -#NEXUS - -BEGIN TAXA; - DIMENSIONS NTAX = 8; - TAXLABELS - 'B_FR_83_HXB2' 'B_US_83_RF' 'B_US_86_JRFL' 'B_US_90_WEAU160' 'D_CD_83_ELI' 'D_CD_83_NDK' 'D_CD_84_84ZR085' 'D_UG_94_94UG114' ; -END; - -BEGIN CHARACTERS; - DIMENSIONS NCHAR = 1320; - FORMAT - DATATYPE = DNA - GAP=- - MISSING=? - ; - -MATRIX - 'B_FR_83_HXB2' CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTC - 'B_US_83_RF' CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAGGAAAAAATAAAAGCATTGGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCCAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAGTTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAGAAATCAGTAACAGTATTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGAGTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAAACACCACGGATTAGATATCAGTACAATGTGCTTCCACAAGGGTGGAAAGGATCACCAGCAATATTCCAAAGTAGTATGACAAAAATCTTAGAGCCTTTTAAAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGAGAACATCTGTTAAAGTGGGGGTTTACCACACCGGACAAGAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACAACTAACAAAAGAAGCAGAGCTAGAACTGGCAGAAAATAGGGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATACCAAATTTATCAAGAGCCATTTAAAAACCTGAAAACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAAGTAGCCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAGGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTAAAATTGTGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACTTTC - 'B_US_86_JRFL' CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTCAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAGGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAAAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAGAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGGTATCAGTACAATGTGCTTCCGCAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAATTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAGCAAAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGACAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAGCCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAACTACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAATTCTGAAAACAGGAAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCAATGAAAGCATAGTAATATGGGGAAAGATTCCTAAATTTAAATTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTC - 'B_US_90_WEAU160' CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAGAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTTCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTACCCTTAGATGAAGACTTCAGGAAGTACACTGCATTTACCATACCTAGTATAAACAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATATTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAAAAAGACCCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAAAGCTGCCAGAAAAAGAAAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAAGCAACTATGTAAACTCCTTAGGGGGACCAAAGCACTAACAGAAATAATACCAATAACAGAAGAAGCAGAGCTAGAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCGGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAGCTACAGAAGCAGGGGCAAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAGAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTATCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTC - 'D_CD_83_ELI' CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGATATGGAAAAGGAAGGAAAAATTTCAAGAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGACAGTACCAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGATTTCTGGGAAGTTCAATTAGGAATACCGCATCCTGCAGGGCTGAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGATTTTAGGAAATATACCGCCTTTACCATATCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCGGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCCTTTAGAAAACAAAATCCAGAAATGGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGGACAAAAATAGAGAAATTAAGAGAACATCTATTGAGGTGGGGATTTACCAGACCAGATAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGTCTATAAAACTGCCAGAAAAGGAGAGCTGGACTGTCAATGATATACAGAACTTAGTGGAGAGATTAAACTGGGCAAGCCAGATTTATCCAGGAATTAAAGTAAGACAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAATTAGAACTGGCAGAAAACAGGGAAATTTTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGCACGGCCAATGGACATACCAAATTTATCAAGAACCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAGCAATTAGCAGAGGCAGTGCAAAGAATATCCACAGAAAGCATAGTGATATGGGGAAGGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACATGGTGGGCAGAGTATTGGCAAGCCACTTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCTTTAGTAAAATTATGGTACCAGTTAGAGAAGGAACCCATAATAGGAGCAGAAACTTTC - 'D_CD_83_NDK' CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAGAATTGGGCCTGAAAATCCATATAATACTCCAATATTTGCCATAAAGAAAAAAGACAGTACCAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGATTTCTGGGAGGTTCAATTAGGAATACCGCATCCTGCAGGGCTGAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTCTCAGTTCCCTTAGATGAAGATTTTAGGAAATATACCGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTCCCACAGGGATGGAAAGGATCACCGGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCCTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTAAGAGAACATCTATTGAGGTGGGGATTTACCACACCAGATAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAAACCTGCCAGAAAAAGAAAGCTGGACTGTCAATGATATACAGAAGTTAGTGGGGAAATTAAACTGGGCAAGCCAGATTTATGCAGGAATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAATTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAACTACAGAAACAAGGGGACGGCCAATGGACATACCAAATTTATCAAGAACCATTTAAAAATCTAAAAACAGGAAAGTATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTGATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAGGAAACATGGGAAACATGGTGGATAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCTTTAGTAAAATTATGGTACCAGTTAGAGAAGGAACCCATAATAGGAGCAGAAACTTTC - 'D_CD_84_84ZR085' CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCGTTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGATATGGAAAAGGAAGGAAAAATTTCAAGAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGGATACCACATCCTGCAGGATTAAAGAAGAAAAAGTCAATAACAGTACTGGATGTGGGCGATGCATATTTTTCAATTCCCTTATGTGAAGACTTTAGGAAGTACACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGATAAAAATCTTAGAGCCCTTTAGAAAACAAAATCCAGAAGTAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGATTTAGAAATAGGACAGCATAGAGCAAAAATAGAGAAATTAAGAGAACATCTGTTGAGGTGGGGGCTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGTCTATAACACTGCCAGAGAAAGAAAGCTGGACTGTCAATGATATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGCCAGATTTATCCAGGAATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAGGCACTAACAGAGGTAATACCACTAACAGAAGAAGCAGAATTAGAACTGGCAGAAAACAGGGAGATTCTAAAGGAACCAATGCATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAATTACAGAAACAAGGGCAAGGTCAATGGACATATCAAATTTATCAAGAACCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCATAGAAAGCATAGTGATATGGGGAAAGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACATGGTGGATAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCTTTAGTAAAATTATGGTACCAGTTAGAGAAGGAACCCATAATAGGAGCAGAAACTTTC - 'D_UG_94_94UG114' CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGGATGGATGGCCCAAAAGTTAAACAATGGCCGTTGACAGAAGAAAAAATAAAAGCACTAATAGAAATTTGTTCAGAACTAGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAACCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTTTGGGAAGTTCAACTAGGAATACCACATCCTGCAGGGCTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGACGCATATTTTTCAGTTCCCTTACATGAAGACTTTAGAAAATATACCGCATTCACCATACCTAGTACAAACAATGAGACACCAGGAATTAGATATCAGTACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAACCTTTTAGAAAACAAAATCCAGAAATGATTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAATTAAGGGGACACCTCTTGAAGTGGGGATTTACCACACCAGACAAAAAGTATCAGAAAGAACCCCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATACATCTGCCAGAAAAGGAAAGCTGGACTGTCAATGATATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGCCAGATTTATCCAGGAATTAAAGTAAGACAATTATGCAAATGCCTTAGGGGAGCCAAAGCACTGACAGAAGTAATACCACTGACAGCAGAAGCAGAATTAGAACTGGCAGAAAACAGGGAAATACTAAAAGAACCAGTACATGGAGCGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGCAAGATCAATGGACATATCAAATATATCAAGAACAATATAAAAATCTGAAAACAGGAAAGTATGCGAAAATGAGGGGTACCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAGAAAATAGCCCAAGAATGTATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAGGCCACCTGGATTCCTGAGTGGGAGTATGTCAACACCCCTCCTTTAGTTAAATTATGGTATCAGTTAGAGAAGGAACCCATAGTAGGAGCAGAAACTTTC; -END; - -BEGIN TREES; - TREE tree = ((((D_CD_83_ELI,D_CD_83_NDK),D_UG_94_94UG114),D_CD_84_84ZR085),B_US_83_RF,((B_FR_83_HXB2,B_US_86_JRFL),B_US_90_WEAU160{B_US_90_WEAU160_BRANCH})); -END; - -BEGIN HYPHY; - - -global busted.background.bsrel_mixture_aux_0=0.1693698006934513; -busted.background.bsrel_mixture_aux_0:<1; -global busted.background.bsrel_mixture_aux_1=0.988107636959172; -busted.background.bsrel_mixture_aux_1:<1; -global busted.background.omega1=0.2120937673953722; -busted.background.omega1:<1; -global busted.background.omega2=0.1679188282558003; -busted.background.omega2:<1; -global busted.background.omega3=13.84252711122189; -global busted.test.theta_AT=0.08592789487428711; -global busted.test.theta_CG=0.3252168536335274; -global busted.test.theta_CT=1.270142771514482; -global busted.test.theta_AC=0.2087011772321373; -global busted.test.theta_GT=0.01381611313186033; -global busted.test.bsrel_mixture_aux_0=0.9533274940567786; -busted.test.bsrel_mixture_aux_0:<1; -global busted.test.omega1=0.08367159828032572; -busted.test.omega1:<1; -global busted.test.bsrel_mixture_aux_1=0.7963836507940498; -busted.test.bsrel_mixture_aux_1:<1; -global busted.test.omega3=34.20463703717275; -busted.test.omega3:>1; -busted.test.omega3:<10000000000; -global busted.test.omega2=0.2493792697064242; -busted.test.omega2:<1; -global busted.test.theta_AG:=1; -global busted.background.theta_AC:=busted.test.theta_AC; -global busted.background.theta_AG:=1; -global busted.background.theta_AT:=busted.test.theta_AT; -global busted.background.theta_CG:=busted.test.theta_CG; -global busted.background.theta_CT:=busted.test.theta_CT; -global busted.background.theta_GT:=busted.test.theta_GT; -busted.background_Q_component_1={61,61}; -busted.background_Q_component_1[0][1]:=0.09717451507454297*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[0][2]:=0.1963563685387479*t*busted.background.theta_AG; -busted.background_Q_component_1[0][3]:=0.1989860284705866*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[0][4]:=0.1818409092376876*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[0][8]:=0.1563402972714242*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[0][12]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[0][16]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[0][32]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[1][0]:=0.5074830879161225*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[1][2]:=0.1963563685387479*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[1][3]:=0.1989860284705866*t*busted.background.theta_CT; -busted.background_Q_component_1[1][5]:=0.1818409092376876*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[1][9]:=0.1563402972714242*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[1][13]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[1][17]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[1][33]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[1][48]:=0.257146542110382*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[2][0]:=0.5074830879161225*t*busted.background.theta_AG; -busted.background_Q_component_1[2][1]:=0.09717451507454297*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[2][3]:=0.1989860284705866*t*busted.background.omega1*busted.background.theta_GT; -busted.background_Q_component_1[2][6]:=0.1818409092376876*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[2][10]:=0.1563402972714242*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[2][14]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[2][18]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[2][34]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[3][0]:=0.5074830879161225*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[3][1]:=0.09717451507454297*t*busted.background.theta_CT; -busted.background_Q_component_1[3][2]:=0.1963563685387479*t*busted.background.omega1*busted.background.theta_GT; -busted.background_Q_component_1[3][7]:=0.1818409092376876*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[3][11]:=0.1563402972714242*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[3][15]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[3][19]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[3][35]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[3][49]:=0.257146542110382*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[4][0]:=0.4256503784977386*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[4][5]:=0.09717451507454297*t*busted.background.theta_AC; -busted.background_Q_component_1[4][6]:=0.1963563685387479*t*busted.background.theta_AG; -busted.background_Q_component_1[4][7]:=0.1989860284705866*t*busted.background.theta_AT; -busted.background_Q_component_1[4][8]:=0.1563402972714242*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[4][12]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_CT; -busted.background_Q_component_1[4][20]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[4][36]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[4][50]:=0.257146542110382*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[5][1]:=0.4256503784977386*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[5][4]:=0.5074830879161225*t*busted.background.theta_AC; -busted.background_Q_component_1[5][6]:=0.1963563685387479*t*busted.background.theta_CG; -busted.background_Q_component_1[5][7]:=0.1989860284705866*t*busted.background.theta_CT; -busted.background_Q_component_1[5][9]:=0.1563402972714242*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[5][13]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_CT; -busted.background_Q_component_1[5][21]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[5][37]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[5][51]:=0.257146542110382*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[6][2]:=0.4256503784977386*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[6][4]:=0.5074830879161225*t*busted.background.theta_AG; -busted.background_Q_component_1[6][5]:=0.09717451507454297*t*busted.background.theta_CG; -busted.background_Q_component_1[6][7]:=0.1989860284705866*t*busted.background.theta_GT; -busted.background_Q_component_1[6][10]:=0.1563402972714242*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[6][14]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_CT; -busted.background_Q_component_1[6][22]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[6][38]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[6][52]:=0.257146542110382*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[7][3]:=0.4256503784977386*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[7][4]:=0.5074830879161225*t*busted.background.theta_AT; -busted.background_Q_component_1[7][5]:=0.09717451507454297*t*busted.background.theta_CT; -busted.background_Q_component_1[7][6]:=0.1963563685387479*t*busted.background.theta_GT; -busted.background_Q_component_1[7][11]:=0.1563402972714242*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[7][15]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_CT; -busted.background_Q_component_1[7][23]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[7][39]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[7][53]:=0.257146542110382*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[8][0]:=0.4256503784977386*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[8][4]:=0.1818409092376876*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[8][9]:=0.09717451507454297*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[8][10]:=0.1963563685387479*t*busted.background.theta_AG; -busted.background_Q_component_1[8][11]:=0.1989860284705866*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[8][12]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_GT; -busted.background_Q_component_1[8][24]:=0.1712746635706107*t*busted.background.theta_AC; -busted.background_Q_component_1[8][40]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[9][1]:=0.4256503784977386*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[9][5]:=0.1818409092376876*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[9][8]:=0.5074830879161225*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[9][10]:=0.1963563685387479*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[9][11]:=0.1989860284705866*t*busted.background.theta_CT; -busted.background_Q_component_1[9][13]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_GT; -busted.background_Q_component_1[9][25]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[9][41]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[9][54]:=0.257146542110382*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[10][2]:=0.4256503784977386*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[10][6]:=0.1818409092376876*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[10][8]:=0.5074830879161225*t*busted.background.theta_AG; -busted.background_Q_component_1[10][9]:=0.09717451507454297*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[10][11]:=0.1989860284705866*t*busted.background.omega1*busted.background.theta_GT; -busted.background_Q_component_1[10][14]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_GT; -busted.background_Q_component_1[10][26]:=0.1712746635706107*t*busted.background.theta_AC; -busted.background_Q_component_1[10][42]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[10][55]:=0.257146542110382*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[11][3]:=0.4256503784977386*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[11][7]:=0.1818409092376876*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[11][8]:=0.5074830879161225*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[11][9]:=0.09717451507454297*t*busted.background.theta_CT; -busted.background_Q_component_1[11][10]:=0.1963563685387479*t*busted.background.omega1*busted.background.theta_GT; -busted.background_Q_component_1[11][15]:=0.2361684149931496*t*busted.background.omega1*busted.background.theta_GT; -busted.background_Q_component_1[11][27]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[11][43]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[11][56]:=0.257146542110382*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[12][0]:=0.4256503784977386*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[12][4]:=0.1818409092376876*t*busted.background.omega1*busted.background.theta_CT; -busted.background_Q_component_1[12][8]:=0.1563402972714242*t*busted.background.omega1*busted.background.theta_GT; -busted.background_Q_component_1[12][13]:=0.09717451507454297*t*busted.background.theta_AC; -busted.background_Q_component_1[12][14]:=0.1963563685387479*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[12][15]:=0.1989860284705866*t*busted.background.theta_AT; -busted.background_Q_component_1[12][28]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[12][44]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[12][57]:=0.257146542110382*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[13][1]:=0.4256503784977386*t*busted.background.omega1*busted.background.theta_AT; -busted.background_Q_component_1[13][5]:=0.1818409092376876*t*busted.background.omega1*busted.background.theta_CT; -busted.background_Q_component_1[13][9]:=0.1563402972714242*t*busted.background.omega1*busted.background.theta_GT; -busted.background_Q_component_1[13][12]:=0.5074830879161225*t*busted.background.theta_AC; -busted.background_Q_component_1[13][14]:=0.1963563685387479*t*busted.background.omega1*busted.background.theta_CG; -busted.background_Q_component_1[13][15]:=0.1989860284705866*t*busted.background.theta_CT; -busted.background_Q_component_1[13][29]:=0.1712746635706107*t*busted.background.omega1*busted.background.theta_AC; -busted.background_Q_component_1[13][45]:=0.2567033972679326*t*busted.background.omega1*busted.background.theta_AG; -busted.background_Q_component_1[13][58]:=0.257146542110382*t*busted.background.omega1*busted.background.theta_AT; 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-{0.01586044121725868} -{0.01607284872448998} -{0.01751178502783737} -{0.003353213651232053} -{0.006775694789785172} -{0.006866436807635995} -{0.01505600521072376} -{0.002882972930821469} -{0.005825499564956559} -{0.005903516300053625} -{0.02274367484777162} -{0.004355032959661065} -{0.008800028033786655} -{0.008917880494044083} -{0.06143704799998004} -{0.01176416611541591} -{0.0237713451467977} -{0.0240896977132239} -{0.0262463496652457} -{0.005025736545566795} -{0.01015528996016046} -{0.01029129247081581} -{0.02256567087217255} -{0.004320948178469224} -{0.008731154380523415} -{0.00884808446536876} -{0.034087812394816} -{0.006527245376826684} -{0.01318932435908579} -{0.01336595951511979} -{0.01178447449308153} -{0.02413128354890585} -{0.0262916585104385} -{0.005034412430862358} -{0.01017282094890981} -{0.01030905823951665} -{0.004328407393735399} -{0.008746226896405704} -{0.008863358836639712} -{0.03414665788893068} -{0.006538513303760755} -{0.0132120929750345} -{0.01338903305480236} -}; -Model busted.background=('Exp(busted.background_Q_component_1)*1*busted.background.bsrel_mixture_aux_0+Exp(busted.background_Q_component_2)*1*(1-busted.background.bsrel_mixture_aux_0)*busted.background.bsrel_mixture_aux_1+Exp(busted.background_Q_component_3)*1*(1-busted.background.bsrel_mixture_aux_0)*(1-busted.background.bsrel_mixture_aux_1)',busted.background_pi,EXPLICIT_FORM_MATRIX_EXPONENTIAL); - -busted.test_Q_component_1={61,61}; -busted.test_Q_component_1[0][1]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[0][2]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[0][3]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[0][4]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[0][8]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[0][12]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[0][16]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[0][32]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[1][0]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[1][2]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[1][3]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[1][5]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[1][9]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[1][13]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[1][17]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[1][33]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[1][48]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[2][0]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[2][1]:=0.09717451507454297*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[2][3]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[2][6]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[2][10]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[2][14]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[2][18]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[2][34]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[3][0]:=0.5074830879161225*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[3][1]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[3][2]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[3][7]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[3][11]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[3][15]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[3][19]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[3][35]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[3][49]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[4][0]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[4][5]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_1[4][6]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[4][7]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_1[4][8]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[4][12]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[4][20]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[4][36]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[4][50]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[5][1]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[5][4]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_1[5][6]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_1[5][7]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[5][9]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[5][13]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[5][21]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[5][37]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[5][51]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[6][2]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[6][4]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[6][5]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_1[6][7]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_1[6][10]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[6][14]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[6][22]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[6][38]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[6][52]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[7][3]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[7][4]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_1[7][5]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[7][6]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_1[7][11]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[7][15]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[7][23]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[7][39]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[7][53]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[8][0]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[8][4]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[8][9]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[8][10]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[8][11]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[8][12]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[8][24]:=0.1712746635706107*t*busted.test.theta_AC; -busted.test_Q_component_1[8][40]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[9][1]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[9][5]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[9][8]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[9][10]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[9][11]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[9][13]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[9][25]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[9][41]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[9][54]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[10][2]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[10][6]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[10][8]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[10][9]:=0.09717451507454297*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[10][11]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[10][14]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[10][26]:=0.1712746635706107*t*busted.test.theta_AC; -busted.test_Q_component_1[10][42]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[10][55]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[11][3]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[11][7]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[11][8]:=0.5074830879161225*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[11][9]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[11][10]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[11][15]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[11][27]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[11][43]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[11][56]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[12][0]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[12][4]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[12][8]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[12][13]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_1[12][14]:=0.1963563685387479*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[12][15]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_1[12][28]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[12][44]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[12][57]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[13][1]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[13][5]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[13][9]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[13][12]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_1[13][14]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[13][15]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[13][29]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[13][45]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[13][58]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[14][2]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[14][6]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[14][10]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[14][12]:=0.5074830879161225*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[14][13]:=0.09717451507454297*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[14][15]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[14][30]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[14][46]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[14][59]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[15][3]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[15][7]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[15][11]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[15][12]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_1[15][13]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[15][14]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[15][31]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[15][47]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[15][60]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[16][0]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[16][17]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[16][18]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[16][19]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[16][20]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[16][24]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[16][28]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[16][32]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[17][1]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[17][16]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[17][18]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[17][19]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[17][21]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[17][25]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[17][29]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[17][33]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[17][48]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[18][2]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[18][16]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[18][17]:=0.09717451507454297*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[18][19]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[18][22]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[18][26]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[18][30]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[18][34]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[19][3]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[19][16]:=0.5074830879161225*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[19][17]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[19][18]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[19][23]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[19][27]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[19][31]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[19][35]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[19][49]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[20][4]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[20][16]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[20][21]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_1[20][22]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[20][23]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_1[20][24]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[20][28]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[20][36]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[20][50]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[21][5]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[21][17]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[21][20]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_1[21][22]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_1[21][23]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[21][25]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[21][29]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[21][37]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[21][51]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[22][6]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[22][18]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[22][20]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[22][21]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_1[22][23]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_1[22][26]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[22][30]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[22][38]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[22][52]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[23][7]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[23][19]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[23][20]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_1[23][21]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[23][22]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_1[23][27]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[23][31]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[23][39]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[23][53]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[24][8]:=0.3148753970510747*t*busted.test.theta_AC; -busted.test_Q_component_1[24][16]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[24][20]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[24][25]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_1[24][26]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[24][27]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_1[24][28]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[24][40]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[25][9]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[25][17]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[25][21]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[25][24]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_1[25][26]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_1[25][27]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[25][29]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[25][41]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[25][54]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[26][10]:=0.3148753970510747*t*busted.test.theta_AC; -busted.test_Q_component_1[26][18]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[26][22]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[26][24]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[26][25]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_1[26][27]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_1[26][30]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[26][42]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[26][55]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[27][11]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[27][19]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[27][23]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[27][24]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_1[27][25]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[27][26]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_1[27][31]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[27][43]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[27][56]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[28][12]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[28][16]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[28][20]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[28][24]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[28][29]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_1[28][30]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[28][31]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_1[28][44]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[28][57]:=0.257146542110382*t*busted.test.theta_CT; -busted.test_Q_component_1[29][13]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[29][17]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[29][21]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[29][25]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[29][28]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_1[29][30]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_1[29][31]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[29][45]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[29][58]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[30][14]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[30][18]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[30][22]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[30][26]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[30][28]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[30][29]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_1[30][31]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_1[30][46]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[30][59]:=0.257146542110382*t*busted.test.theta_CT; -busted.test_Q_component_1[31][15]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[31][19]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[31][23]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[31][27]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[31][28]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_1[31][29]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[31][30]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_1[31][47]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[31][60]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[32][0]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[32][16]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[32][33]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[32][34]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[32][35]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[32][36]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[32][40]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[32][44]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[33][1]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[33][17]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[33][32]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[33][34]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[33][35]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[33][37]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[33][41]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[33][45]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[33][48]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[34][2]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[34][18]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[34][32]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[34][33]:=0.09717451507454297*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[34][35]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[34][38]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[34][42]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[34][46]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[35][3]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[35][19]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[35][32]:=0.5074830879161225*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[35][33]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[35][34]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[35][39]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[35][43]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[35][47]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[35][49]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[36][4]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[36][20]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[36][32]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[36][37]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_1[36][38]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[36][39]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_1[36][40]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[36][44]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[36][50]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[37][5]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[37][21]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[37][33]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[37][36]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_1[37][38]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_1[37][39]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[37][41]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[37][45]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[37][51]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[38][6]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[38][22]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[38][34]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[38][36]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[38][37]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_1[38][39]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_1[38][42]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[38][46]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[38][52]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[39][7]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[39][23]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[39][35]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[39][36]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_1[39][37]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[39][38]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_1[39][43]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[39][47]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[39][53]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[40][8]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[40][24]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[40][32]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[40][36]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[40][41]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_1[40][42]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[40][43]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_1[40][44]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[41][9]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[41][25]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[41][33]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[41][37]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[41][40]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_1[41][42]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_1[41][43]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[41][45]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[41][54]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[42][10]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[42][26]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[42][34]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[42][38]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[42][40]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[42][41]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_1[42][43]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_1[42][46]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[42][55]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[43][11]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[43][27]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[43][35]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[43][39]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[43][40]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_1[43][41]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[43][42]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_1[43][47]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[43][56]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[44][12]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[44][28]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[44][32]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[44][36]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[44][40]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[44][45]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_1[44][46]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[44][47]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_1[44][57]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[45][13]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[45][29]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[45][33]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[45][37]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[45][41]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[45][44]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_1[45][46]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_1[45][47]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[45][58]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[46][14]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[46][30]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[46][34]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[46][38]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[46][42]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[46][44]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[46][45]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_1[46][47]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_1[46][59]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[47][15]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[47][31]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[47][35]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[47][39]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[47][43]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[47][44]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_1[47][45]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[47][46]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_1[47][60]:=0.257146542110382*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[48][1]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[48][17]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[48][33]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[48][49]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[48][51]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[48][54]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[48][58]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[49][3]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[49][19]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[49][35]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[49][48]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[49][53]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[49][56]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[49][60]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[50][4]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[50][20]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[50][36]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[50][51]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_1[50][52]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[50][53]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_1[50][57]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[51][5]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[51][21]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[51][37]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[51][48]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[51][50]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_1[51][52]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_1[51][53]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[51][54]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[51][58]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[52][6]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[52][22]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[52][38]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[52][50]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[52][51]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_1[52][53]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_1[52][55]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[52][59]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[53][7]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[53][23]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[53][39]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[53][49]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[53][50]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_1[53][51]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[53][52]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_1[53][56]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[53][60]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[54][9]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[54][25]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[54][41]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[54][48]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[54][51]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[54][55]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[54][56]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[54][58]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[55][10]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[55][26]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[55][42]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[55][52]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[55][54]:=0.09717451507454297*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[55][56]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[55][59]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[56][11]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[56][27]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[56][43]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[56][49]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega1; -busted.test_Q_component_1[56][53]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[56][54]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[56][55]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[56][60]:=0.2361684149931496*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[57][12]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[57][28]:=0.1712746635706107*t*busted.test.theta_CT; -busted.test_Q_component_1[57][44]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[57][50]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[57][58]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[57][59]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_1[57][60]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[58][13]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[58][29]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[58][45]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[58][48]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[58][51]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[58][54]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[58][57]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega1; -busted.test_Q_component_1[58][59]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[58][60]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_1[59][14]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[59][30]:=0.1712746635706107*t*busted.test.theta_CT; -busted.test_Q_component_1[59][46]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[59][52]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[59][55]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[59][57]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_1[59][58]:=0.09717451507454297*t*busted.test.omega1*busted.test.theta_CG; -busted.test_Q_component_1[59][60]:=0.1989860284705866*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[60][15]:=0.3148753970510747*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[60][31]:=0.1712746635706107*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[60][47]:=0.2567033972679326*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[60][49]:=0.4256503784977386*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[60][53]:=0.1818409092376876*t*busted.test.omega1*busted.test.theta_CT; -busted.test_Q_component_1[60][56]:=0.1563402972714242*t*busted.test.omega1*busted.test.theta_GT; -busted.test_Q_component_1[60][57]:=0.5074830879161225*t*busted.test.omega1*busted.test.theta_AT; -busted.test_Q_component_1[60][58]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_1[60][59]:=0.1963563685387479*t*busted.test.omega1*busted.test.theta_GT; - - -busted.test_Q_component_2={61,61}; -busted.test_Q_component_2[0][1]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[0][2]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[0][3]:=0.1989860284705866*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[0][4]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[0][8]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[0][12]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[0][16]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[0][32]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[1][0]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[1][2]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[1][3]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[1][5]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[1][9]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[1][13]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[1][17]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[1][33]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[1][48]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[2][0]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[2][1]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[2][3]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[2][6]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[2][10]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[2][14]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[2][18]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[2][34]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[3][0]:=0.5074830879161225*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[3][1]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[3][2]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[3][7]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[3][11]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[3][15]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[3][19]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[3][35]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[3][49]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[4][0]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[4][5]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_2[4][6]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[4][7]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_2[4][8]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[4][12]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[4][20]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[4][36]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[4][50]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[5][1]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[5][4]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_2[5][6]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_2[5][7]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[5][9]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[5][13]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[5][21]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[5][37]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[5][51]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[6][2]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[6][4]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[6][5]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_2[6][7]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_2[6][10]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[6][14]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[6][22]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[6][38]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[6][52]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[7][3]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[7][4]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_2[7][5]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[7][6]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_2[7][11]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[7][15]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[7][23]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[7][39]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[7][53]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[8][0]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[8][4]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[8][9]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[8][10]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[8][11]:=0.1989860284705866*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[8][12]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[8][24]:=0.1712746635706107*t*busted.test.theta_AC; -busted.test_Q_component_2[8][40]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[9][1]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[9][5]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[9][8]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[9][10]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[9][11]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[9][13]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[9][25]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[9][41]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[9][54]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[10][2]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[10][6]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[10][8]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[10][9]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[10][11]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[10][14]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[10][26]:=0.1712746635706107*t*busted.test.theta_AC; -busted.test_Q_component_2[10][42]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[10][55]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[11][3]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[11][7]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[11][8]:=0.5074830879161225*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[11][9]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[11][10]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[11][15]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[11][27]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[11][43]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[11][56]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[12][0]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[12][4]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[12][8]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[12][13]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_2[12][14]:=0.1963563685387479*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[12][15]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_2[12][28]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[12][44]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[12][57]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[13][1]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[13][5]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[13][9]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[13][12]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_2[13][14]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[13][15]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[13][29]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[13][45]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[13][58]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[14][2]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[14][6]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[14][10]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[14][12]:=0.5074830879161225*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[14][13]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[14][15]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[14][30]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[14][46]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[14][59]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[15][3]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[15][7]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[15][11]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[15][12]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_2[15][13]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[15][14]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[15][31]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[15][47]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[15][60]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[16][0]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[16][17]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[16][18]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[16][19]:=0.1989860284705866*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[16][20]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[16][24]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[16][28]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[16][32]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[17][1]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[17][16]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[17][18]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[17][19]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[17][21]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[17][25]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[17][29]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[17][33]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[17][48]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[18][2]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[18][16]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[18][17]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[18][19]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[18][22]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[18][26]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[18][30]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[18][34]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[19][3]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[19][16]:=0.5074830879161225*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[19][17]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[19][18]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[19][23]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[19][27]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[19][31]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[19][35]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[19][49]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[20][4]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[20][16]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[20][21]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_2[20][22]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[20][23]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_2[20][24]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[20][28]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[20][36]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[20][50]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[21][5]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[21][17]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[21][20]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_2[21][22]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_2[21][23]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[21][25]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[21][29]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[21][37]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[21][51]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[22][6]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[22][18]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[22][20]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[22][21]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_2[22][23]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_2[22][26]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[22][30]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[22][38]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[22][52]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[23][7]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[23][19]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[23][20]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_2[23][21]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[23][22]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_2[23][27]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[23][31]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[23][39]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[23][53]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[24][8]:=0.3148753970510747*t*busted.test.theta_AC; -busted.test_Q_component_2[24][16]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[24][20]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[24][25]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_2[24][26]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[24][27]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_2[24][28]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[24][40]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[25][9]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[25][17]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[25][21]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[25][24]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_2[25][26]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_2[25][27]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[25][29]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[25][41]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[25][54]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[26][10]:=0.3148753970510747*t*busted.test.theta_AC; -busted.test_Q_component_2[26][18]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[26][22]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[26][24]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[26][25]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_2[26][27]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_2[26][30]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[26][42]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[26][55]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[27][11]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[27][19]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[27][23]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[27][24]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_2[27][25]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[27][26]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_2[27][31]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[27][43]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[27][56]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[28][12]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[28][16]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[28][20]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[28][24]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[28][29]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_2[28][30]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[28][31]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_2[28][44]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[28][57]:=0.257146542110382*t*busted.test.theta_CT; -busted.test_Q_component_2[29][13]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[29][17]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[29][21]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[29][25]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[29][28]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_2[29][30]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_2[29][31]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[29][45]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[29][58]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[30][14]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[30][18]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[30][22]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[30][26]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[30][28]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[30][29]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_2[30][31]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_2[30][46]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[30][59]:=0.257146542110382*t*busted.test.theta_CT; -busted.test_Q_component_2[31][15]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[31][19]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[31][23]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[31][27]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[31][28]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_2[31][29]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[31][30]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_2[31][47]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[31][60]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[32][0]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[32][16]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[32][33]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[32][34]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[32][35]:=0.1989860284705866*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[32][36]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[32][40]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[32][44]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[33][1]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[33][17]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[33][32]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[33][34]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[33][35]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[33][37]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[33][41]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[33][45]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[33][48]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[34][2]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[34][18]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[34][32]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[34][33]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[34][35]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[34][38]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[34][42]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[34][46]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[35][3]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[35][19]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[35][32]:=0.5074830879161225*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[35][33]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[35][34]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[35][39]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[35][43]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[35][47]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[35][49]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[36][4]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[36][20]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[36][32]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[36][37]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_2[36][38]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[36][39]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_2[36][40]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[36][44]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[36][50]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[37][5]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[37][21]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[37][33]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[37][36]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_2[37][38]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_2[37][39]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[37][41]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[37][45]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[37][51]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[38][6]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[38][22]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[38][34]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[38][36]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[38][37]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_2[38][39]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_2[38][42]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[38][46]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[38][52]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[39][7]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[39][23]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[39][35]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[39][36]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_2[39][37]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[39][38]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_2[39][43]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[39][47]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[39][53]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[40][8]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[40][24]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[40][32]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[40][36]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[40][41]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_2[40][42]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[40][43]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_2[40][44]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[41][9]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[41][25]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[41][33]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[41][37]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[41][40]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_2[41][42]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_2[41][43]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[41][45]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[41][54]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[42][10]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[42][26]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[42][34]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[42][38]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[42][40]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[42][41]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_2[42][43]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_2[42][46]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[42][55]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[43][11]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[43][27]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[43][35]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[43][39]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[43][40]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_2[43][41]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[43][42]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_2[43][47]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[43][56]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[44][12]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[44][28]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[44][32]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[44][36]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[44][40]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[44][45]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_2[44][46]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[44][47]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_2[44][57]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[45][13]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[45][29]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[45][33]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[45][37]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[45][41]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[45][44]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_2[45][46]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_2[45][47]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[45][58]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[46][14]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[46][30]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[46][34]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[46][38]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[46][42]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[46][44]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[46][45]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_2[46][47]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_2[46][59]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[47][15]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[47][31]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[47][35]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[47][39]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[47][43]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[47][44]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_2[47][45]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[47][46]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_2[47][60]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[48][1]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[48][17]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[48][33]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[48][49]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[48][51]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[48][54]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[48][58]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[49][3]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[49][19]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[49][35]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[49][48]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[49][53]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[49][56]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[49][60]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[50][4]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[50][20]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[50][36]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[50][51]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_2[50][52]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[50][53]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_2[50][57]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[51][5]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[51][21]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[51][37]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[51][48]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[51][50]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_2[51][52]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_2[51][53]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[51][54]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[51][58]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[52][6]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[52][22]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[52][38]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[52][50]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[52][51]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_2[52][53]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_2[52][55]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[52][59]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[53][7]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[53][23]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[53][39]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[53][49]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[53][50]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_2[53][51]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[53][52]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_2[53][56]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[53][60]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[54][9]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[54][25]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[54][41]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[54][48]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[54][51]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[54][55]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[54][56]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[54][58]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[55][10]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[55][26]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[55][42]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[55][52]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[55][54]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[55][56]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[55][59]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[56][11]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[56][27]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[56][43]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[56][49]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega2; -busted.test_Q_component_2[56][53]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[56][54]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[56][55]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[56][60]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[57][12]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[57][28]:=0.1712746635706107*t*busted.test.theta_CT; -busted.test_Q_component_2[57][44]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[57][50]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[57][58]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[57][59]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_2[57][60]:=0.1989860284705866*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[58][13]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[58][29]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[58][45]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[58][48]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[58][51]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[58][54]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[58][57]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega2; -busted.test_Q_component_2[58][59]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[58][60]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_2[59][14]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[59][30]:=0.1712746635706107*t*busted.test.theta_CT; -busted.test_Q_component_2[59][46]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[59][52]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[59][55]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[59][57]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_2[59][58]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega2; -busted.test_Q_component_2[59][60]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[60][15]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[60][31]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[60][47]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[60][49]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[60][53]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega2; -busted.test_Q_component_2[60][56]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega2; -busted.test_Q_component_2[60][57]:=0.5074830879161225*t*busted.test.theta_AT*busted.test.omega2; -busted.test_Q_component_2[60][58]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_2[60][59]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega2; - - -busted.test_Q_component_3={61,61}; -busted.test_Q_component_3[0][1]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[0][2]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[0][3]:=0.1989860284705866*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[0][4]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[0][8]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[0][12]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[0][16]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[0][32]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[1][0]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[1][2]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[1][3]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[1][5]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[1][9]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[1][13]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[1][17]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[1][33]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[1][48]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[2][0]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[2][1]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[2][3]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[2][6]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[2][10]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[2][14]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[2][18]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[2][34]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[3][0]:=0.5074830879161225*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[3][1]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[3][2]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[3][7]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[3][11]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[3][15]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[3][19]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[3][35]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[3][49]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[4][0]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[4][5]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_3[4][6]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[4][7]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_3[4][8]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[4][12]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[4][20]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[4][36]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[4][50]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[5][1]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[5][4]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_3[5][6]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_3[5][7]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[5][9]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[5][13]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[5][21]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[5][37]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[5][51]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[6][2]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[6][4]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[6][5]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_3[6][7]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_3[6][10]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[6][14]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[6][22]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[6][38]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[6][52]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[7][3]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[7][4]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_3[7][5]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[7][6]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_3[7][11]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[7][15]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[7][23]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[7][39]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[7][53]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[8][0]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[8][4]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[8][9]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[8][10]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[8][11]:=0.1989860284705866*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[8][12]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[8][24]:=0.1712746635706107*t*busted.test.theta_AC; -busted.test_Q_component_3[8][40]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[9][1]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[9][5]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[9][8]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[9][10]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[9][11]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[9][13]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[9][25]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[9][41]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[9][54]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[10][2]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[10][6]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[10][8]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[10][9]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[10][11]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[10][14]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[10][26]:=0.1712746635706107*t*busted.test.theta_AC; -busted.test_Q_component_3[10][42]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[10][55]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[11][3]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[11][7]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[11][8]:=0.5074830879161225*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[11][9]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[11][10]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[11][15]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[11][27]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[11][43]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[11][56]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[12][0]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[12][4]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[12][8]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[12][13]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_3[12][14]:=0.1963563685387479*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[12][15]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_3[12][28]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[12][44]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[12][57]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[13][1]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[13][5]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[13][9]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[13][12]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_3[13][14]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[13][15]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[13][29]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[13][45]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[13][58]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[14][2]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[14][6]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[14][10]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[14][12]:=0.5074830879161225*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[14][13]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[14][15]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[14][30]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[14][46]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[14][59]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[15][3]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[15][7]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[15][11]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[15][12]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_3[15][13]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[15][14]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[15][31]:=0.1712746635706107*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[15][47]:=0.2567033972679326*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[15][60]:=0.257146542110382*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[16][0]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[16][17]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[16][18]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[16][19]:=0.1989860284705866*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[16][20]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[16][24]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[16][28]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[16][32]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[17][1]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[17][16]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[17][18]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[17][19]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[17][21]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[17][25]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[17][29]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[17][33]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[17][48]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[18][2]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[18][16]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[18][17]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[18][19]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[18][22]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[18][26]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[18][30]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[18][34]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[19][3]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[19][16]:=0.5074830879161225*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[19][17]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[19][18]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[19][23]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[19][27]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[19][31]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[19][35]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[19][49]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[20][4]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[20][16]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[20][21]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_3[20][22]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[20][23]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_3[20][24]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[20][28]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[20][36]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[20][50]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[21][5]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[21][17]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[21][20]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_3[21][22]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_3[21][23]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[21][25]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[21][29]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[21][37]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[21][51]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[22][6]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[22][18]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[22][20]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[22][21]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_3[22][23]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_3[22][26]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[22][30]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[22][38]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[22][52]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[23][7]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[23][19]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[23][20]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_3[23][21]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[23][22]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_3[23][27]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[23][31]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[23][39]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[23][53]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[24][8]:=0.3148753970510747*t*busted.test.theta_AC; -busted.test_Q_component_3[24][16]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[24][20]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[24][25]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_3[24][26]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[24][27]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_3[24][28]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[24][40]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[25][9]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[25][17]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[25][21]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[25][24]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_3[25][26]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_3[25][27]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[25][29]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[25][41]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[25][54]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[26][10]:=0.3148753970510747*t*busted.test.theta_AC; -busted.test_Q_component_3[26][18]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[26][22]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[26][24]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[26][25]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_3[26][27]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_3[26][30]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[26][42]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[26][55]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[27][11]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[27][19]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[27][23]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[27][24]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_3[27][25]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[27][26]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_3[27][31]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[27][43]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[27][56]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[28][12]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[28][16]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[28][20]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[28][24]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[28][29]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_3[28][30]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[28][31]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_3[28][44]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[28][57]:=0.257146542110382*t*busted.test.theta_CT; -busted.test_Q_component_3[29][13]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[29][17]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[29][21]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[29][25]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[29][28]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_3[29][30]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_3[29][31]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[29][45]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[29][58]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[30][14]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[30][18]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[30][22]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[30][26]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[30][28]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[30][29]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_3[30][31]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_3[30][46]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[30][59]:=0.257146542110382*t*busted.test.theta_CT; -busted.test_Q_component_3[31][15]:=0.3148753970510747*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[31][19]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[31][23]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[31][27]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[31][28]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_3[31][29]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[31][30]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_3[31][47]:=0.2567033972679326*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[31][60]:=0.257146542110382*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[32][0]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[32][16]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[32][33]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[32][34]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[32][35]:=0.1989860284705866*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[32][36]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[32][40]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[32][44]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[33][1]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[33][17]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[33][32]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[33][34]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[33][35]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[33][37]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[33][41]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[33][45]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[33][48]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[34][2]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[34][18]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[34][32]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[34][33]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[34][35]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[34][38]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[34][42]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[34][46]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[35][3]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[35][19]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[35][32]:=0.5074830879161225*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[35][33]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[35][34]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[35][39]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[35][43]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[35][47]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[35][49]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[36][4]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[36][20]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[36][32]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[36][37]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_3[36][38]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[36][39]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_3[36][40]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[36][44]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[36][50]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[37][5]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[37][21]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[37][33]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[37][36]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_3[37][38]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_3[37][39]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[37][41]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[37][45]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[37][51]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[38][6]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[38][22]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[38][34]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[38][36]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[38][37]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_3[38][39]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_3[38][42]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[38][46]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[38][52]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[39][7]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[39][23]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[39][35]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[39][36]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_3[39][37]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[39][38]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_3[39][43]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[39][47]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[39][53]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[40][8]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[40][24]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[40][32]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[40][36]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[40][41]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_3[40][42]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[40][43]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_3[40][44]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[41][9]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[41][25]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[41][33]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[41][37]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[41][40]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_3[41][42]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_3[41][43]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[41][45]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[41][54]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[42][10]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[42][26]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[42][34]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[42][38]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[42][40]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[42][41]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_3[42][43]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_3[42][46]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[42][55]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[43][11]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[43][27]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[43][35]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[43][39]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[43][40]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_3[43][41]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[43][42]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_3[43][47]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[43][56]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[44][12]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[44][28]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[44][32]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[44][36]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[44][40]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[44][45]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_3[44][46]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[44][47]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_3[44][57]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[45][13]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[45][29]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[45][33]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[45][37]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[45][41]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[45][44]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_3[45][46]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_3[45][47]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[45][58]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[46][14]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[46][30]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[46][34]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[46][38]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[46][42]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[46][44]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[46][45]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_3[46][47]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_3[46][59]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[47][15]:=0.3148753970510747*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[47][31]:=0.1712746635706107*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[47][35]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[47][39]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[47][43]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[47][44]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_3[47][45]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[47][46]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_3[47][60]:=0.257146542110382*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[48][1]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[48][17]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[48][33]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[48][49]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[48][51]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[48][54]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[48][58]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[49][3]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[49][19]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[49][35]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[49][48]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[49][53]:=0.1818409092376876*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[49][56]:=0.1563402972714242*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[49][60]:=0.2361684149931496*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[50][4]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[50][20]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[50][36]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[50][51]:=0.09717451507454297*t*busted.test.theta_AC; -busted.test_Q_component_3[50][52]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[50][53]:=0.1989860284705866*t*busted.test.theta_AT; -busted.test_Q_component_3[50][57]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[51][5]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[51][21]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[51][37]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[51][48]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[51][50]:=0.5074830879161225*t*busted.test.theta_AC; -busted.test_Q_component_3[51][52]:=0.1963563685387479*t*busted.test.theta_CG; -busted.test_Q_component_3[51][53]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[51][54]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[51][58]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[52][6]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[52][22]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[52][38]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[52][50]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[52][51]:=0.09717451507454297*t*busted.test.theta_CG; -busted.test_Q_component_3[52][53]:=0.1989860284705866*t*busted.test.theta_GT; -busted.test_Q_component_3[52][55]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[52][59]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[53][7]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[53][23]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[53][39]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[53][49]:=0.4256503784977386*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[53][50]:=0.5074830879161225*t*busted.test.theta_AT; -busted.test_Q_component_3[53][51]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[53][52]:=0.1963563685387479*t*busted.test.theta_GT; -busted.test_Q_component_3[53][56]:=0.1563402972714242*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[53][60]:=0.2361684149931496*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[54][9]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[54][25]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[54][41]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[54][48]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[54][51]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[54][55]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[54][56]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[54][58]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[55][10]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[55][26]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[55][42]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[55][52]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[55][54]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[55][56]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[55][59]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[56][11]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[56][27]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[56][43]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[56][49]:=0.4256503784977386*t*busted.test.theta_AG*busted.test.omega3; -busted.test_Q_component_3[56][53]:=0.1818409092376876*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[56][54]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[56][55]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[56][60]:=0.2361684149931496*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[57][12]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[57][28]:=0.1712746635706107*t*busted.test.theta_CT; -busted.test_Q_component_3[57][44]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[57][50]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[57][58]:=0.09717451507454297*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[57][59]:=0.1963563685387479*t*busted.test.theta_AG; -busted.test_Q_component_3[57][60]:=0.1989860284705866*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[58][13]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[58][29]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[58][45]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[58][48]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[58][51]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[58][54]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[58][57]:=0.5074830879161225*t*busted.test.theta_AC*busted.test.omega3; -busted.test_Q_component_3[58][59]:=0.1963563685387479*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[58][60]:=0.1989860284705866*t*busted.test.theta_CT; -busted.test_Q_component_3[59][14]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[59][30]:=0.1712746635706107*t*busted.test.theta_CT; -busted.test_Q_component_3[59][46]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[59][52]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[59][55]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[59][57]:=0.5074830879161225*t*busted.test.theta_AG; -busted.test_Q_component_3[59][58]:=0.09717451507454297*t*busted.test.theta_CG*busted.test.omega3; -busted.test_Q_component_3[59][60]:=0.1989860284705866*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[60][15]:=0.3148753970510747*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[60][31]:=0.1712746635706107*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[60][47]:=0.2567033972679326*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[60][49]:=0.4256503784977386*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[60][53]:=0.1818409092376876*t*busted.test.theta_CT*busted.test.omega3; -busted.test_Q_component_3[60][56]:=0.1563402972714242*t*busted.test.theta_GT*busted.test.omega3; -busted.test_Q_component_3[60][57]:=0.5074830879161225*t*busted.test.theta_AT*busted.test.omega3; -busted.test_Q_component_3[60][58]:=0.09717451507454297*t*busted.test.theta_CT; -busted.test_Q_component_3[60][59]:=0.1963563685387479*t*busted.test.theta_GT*busted.test.omega3; - - -busted.test_pi={ -{0.07535940345366139} -{0.01443006409728228} -{0.02915821068672351} -{0.02954870567752823} -{0.03219408024958758} -{0.006164627375802654} -{0.01245659774045292} -{0.01262342001471309} -{0.0276793164843978} -{0.005300125700761717} -{0.01070973633984303} -{0.01085316415297191} -{0.0418125103783387} -{0.008006395714089126} -{0.01617817990958604} -{0.0163948426631036} -{0.0409913146415633} -{0.007849150478922548} -{0.01586044121725868} -{0.01607284872448998} -{0.01751178502783737} -{0.003353213651232053} -{0.006775694789785172} -{0.006866436807635995} -{0.01505600521072376} -{0.002882972930821469} -{0.005825499564956559} -{0.005903516300053625} -{0.02274367484777162} -{0.004355032959661065} -{0.008800028033786655} -{0.008917880494044083} -{0.06143704799998004} -{0.01176416611541591} -{0.0237713451467977} -{0.0240896977132239} -{0.0262463496652457} -{0.005025736545566795} -{0.01015528996016046} -{0.01029129247081581} -{0.02256567087217255} -{0.004320948178469224} -{0.008731154380523415} -{0.00884808446536876} -{0.034087812394816} -{0.006527245376826684} -{0.01318932435908579} -{0.01336595951511979} -{0.01178447449308153} -{0.02413128354890585} -{0.0262916585104385} -{0.005034412430862358} -{0.01017282094890981} -{0.01030905823951665} -{0.004328407393735399} -{0.008746226896405704} -{0.008863358836639712} -{0.03414665788893068} -{0.006538513303760755} -{0.0132120929750345} -{0.01338903305480236} -}; -Model busted.test=('Exp(busted.test_Q_component_1)*1*busted.test.bsrel_mixture_aux_0+Exp(busted.test_Q_component_2)*1*(1-busted.test.bsrel_mixture_aux_0)*busted.test.bsrel_mixture_aux_1+Exp(busted.test_Q_component_3)*1*(1-busted.test.bsrel_mixture_aux_0)*(1-busted.test.bsrel_mixture_aux_1)',busted.test_pi,EXPLICIT_FORM_MATRIX_EXPONENTIAL); -TRY_NUMERIC_SEQUENCE_MATCH=0; -ACCEPT_ROOTED_TREES=0; -Tree QCdustmY.tree_id_0=((((D_CD_83_ELI{busted.background},D_CD_83_NDK{busted.background})Node3{busted.background},D_UG_94_94UG114{busted.background})Node2{busted.background},D_CD_84_84ZR085{busted.background})Node1{busted.background},B_US_83_RF{busted.background},((B_FR_83_HXB2{busted.background},B_US_86_JRFL{busted.background})Node10{busted.background},B_US_90_WEAU160{busted.test})Node9{busted.background}); - -QCdustmY.tree_id_0.D_CD_83_ELI.t=0.1370833707498818; -QCdustmY.tree_id_0.D_CD_83_NDK.t=0.06548157292895862; -QCdustmY.tree_id_0.Node3.t=0.08713663976914707; -QCdustmY.tree_id_0.D_UG_94_94UG114.t=0.4280587759297035; -QCdustmY.tree_id_0.Node2.t=0.01513176299488742; -QCdustmY.tree_id_0.D_CD_84_84ZR085.t=0.2130038858362291; -QCdustmY.tree_id_0.Node1.t=0.1846586758901705; -QCdustmY.tree_id_0.B_US_83_RF.t=0.2063734346567031; -QCdustmY.tree_id_0.B_FR_83_HXB2.t=0.08448292129897501; -QCdustmY.tree_id_0.B_US_86_JRFL.t=0.1299787017728399; -QCdustmY.tree_id_0.Node10.t=0.01154139173279806; -QCdustmY.tree_id_0.B_US_90_WEAU160.t=0.1759147205880889; -QCdustmY.tree_id_0.Node9.t=0.03592645553508322;SetParameter (DEFER_CONSTRAINT_APPLICATION, 1, 0); -SetParameter (DEFER_CONSTRAINT_APPLICATION, 0, 0); - -DataSet busted.codon_data = ReadDataFile(USE_NEXUS_FILE_DATA); -DataSetFilter busted.filter.default = CreateFilter(busted.codon_data,3,"0-1319","4,5,7,6,1,0,2,3","TAA,TAG,TGA"); -ASSUME_REVERSIBLE_MODELS=1; -USE_LAST_RESULTS=0; -LikelihoodFunction QCdustmY.likelihoodFunction = (busted.filter.default,QCdustmY.tree_id_0); - -END; \ No newline at end of file
--- a/test-data/conv-out1.nex Thu Aug 18 13:51:18 2022 +0000 +++ b/test-data/conv-out1.nex Thu Mar 02 15:17:27 2023 +0000 @@ -16,8 +16,8 @@ ; MATRIX - ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ET - ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ET + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LVFFFVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGLSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDLSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT MYVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPVTVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT MLVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
--- a/test-data/relax-in1.nhx Thu Aug 18 13:51:18 2022 +0000 +++ b/test-data/relax-in1.nhx Thu Mar 02 15:17:27 2023 +0000 @@ -1,1 +1,1 @@ -(((Pig:0.147969,Cow{TEST}:0.21343):0.085099,Baboon:0.011873):0.340802,Rat:0.050958) +(((Pig:0.147969,Cow{TEST}:0.21343):0.085099,Baboon:0.011873):0.340802,Rat:0.050958);
--- a/test-data/slac-out1.json Thu Aug 18 13:51:18 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2076 +0,0 @@ -{ - "MLE":{ - "content":{ - "0":{ - "by-branch":{ - "AVERAGED": [ -[131.3409038539508, 387.3032052553191, 18.83333333333334, 62.16666666666666, 0.2532389774551154, 0.1433927495601502, 0.1605116245440958, 0.009922319377965909, 0.3896479078188506, 0.7050801922163503, 0.190671339253091], - [129.582341679606, 390.2657462377136, 20.16666666666666, 84.83333333333334, 0.2492696322088151, 0.1556282006118473, 0.2173732492568301, 0.03578822166983051, 0.1057124571474986, 0.9315947329811959, 0.2526189686412594], - [133.5634277511288, 389.0892183853288, 9, 31, 0.255549127586847, 0.06738371537431539, 0.07967324339812369, 0.007123167975176309, 0.4078805639677862, 0.7273413969784412, 0.100661445687484], - [136.3001744404261, 388.2752414674823, 20.66666666666666, 73.33333333333334, 0.2598295122247097, 0.1516261204471138, 0.1888694552250377, 0.02158671423873519, 0.2256328450945964, 0.8402434326037131, 0.2128981270938909], - 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["Cow"], - ["Node3"], - ["Horse"], - ["Cat"], - ["Node2"], - ["RhMonkey"], - ["Baboon"], - ["Node9"], - ["Human"], - ["Chimp"], - ["Node12"], - ["Node8"], - ["Node1"], - ["Rat"], - ["Mouse"] - ], - "RESOLVED": [ -[131.3409038539508, 387.3032052553191, 18.83333333333334, 62.16666666666666, 0.2532389774551154, 0.1433927495601502, 0.1605116245440958, 0.009922319377965909, 0.3896479078188506, 0.7050801922163503, 0.190671339253091], - [129.582341679606, 390.2657462377136, 20.16666666666666, 84.83333333333334, 0.2492696322088151, 0.1556282006118473, 0.2173732492568301, 0.03578822166983051, 0.1057124571474986, 0.9315947329811959, 0.2526189686412594], - [133.5634277511288, 389.0892183853288, 9, 31, 0.255549127586847, 0.06738371537431539, 0.07967324339812369, 0.007123167975176309, 0.4078805639677862, 0.7273413969784412, 0.100661445687484], - [136.3001744404261, 388.2752414674823, 20.66666666666666, 73.33333333333334, 0.2598295122247097, 0.1516261204471138, 0.1888694552250377, 0.02158671423873519, 0.2256328450945964, 0.8402434326037131, 0.2128981270938909], - 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[1.416174943672039, 1.583825056327962, 0, 0, 0.4720583145573461, 0, 0, 0, 1, 1, 1.725289655759397], - [0.566048512190645, 2.433951487809356, 2, 3, 0.1886828373968816, 3.533266066295039, 1.232563596696871, -1.333516642795554, 0.9504034442939914, 0.2397204872545077, 1.725289655759397] - ] - } - } - }, - "headers": [ -["ES", "Expected synonymous sites"], - ["EN", "Expected non-synonymous sites"], - ["S", "Inferred synonymous substitutions"], - ["N", "Inferred non-synonymous substitutions"], - ["P[S]", "Expected proportion of synonymous sites"], - ["dS", "Inferred synonymous susbsitution rate"], - ["dN", "Inferred non-synonymous susbsitution rate"], - ["dN-dS", "Scaled by the length of the tested branches"], - ["P [dN/dS > 1]", "Binomial probability that S is no greater than the observed value, with P<sub>s</sub> probability of success"], - ["P [dN/dS < 1]", "Binomial probability that S is no less than the observed value, with P<sub>s</sub> probability of success"], - ["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"] - ] - }, - "analysis":{ - "authors":"Sergei L Kosakovsky Pond and Simon DW Frost", - "citation":"Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection (2005). _Mol Biol Evol_ 22 (5): 1208-1222", - "contact":"spond@temple.edu", - "info":"SLAC (Single Likelihood Ancestor Counting)\n uses a maximum likelihood ancestral state reconstruction\n and minimum path substitution counting to estimate site - level\n dS and dN,\n and applies a simple binomial - based test to test\n if dS differs drom dN.\n The estimates aggregate information over all branches,\n so the signal is derived from\n pervasive diversification or conservation. A subset of branches can be selected\n for testing as well.\n Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ", - "requirements":"in-frame codon alignment and a phylogenetic tree", - "version":"2.00" - }, - "branch attributes":{ - "0":{ - "Baboon":{ - "Global MG94xREV":0.001710698008755675, - "Nucleotide GTR":0.001679501710016974, - "amino-acid": [ -["K", "E", "I", "R", "N", "A", "L", "E", "T", "W", "G", "A", "L", "G", "Q", "D", "I", "D", "L", "D", "I", "P", "S", "F", "Q", "M", "S", "D", "D", "I", "D", "D", "I", "K", "W", "E", "K", "T", "S", "D", "K", "K", "K", "I", "A", "Q", "F", "R", "K", "E", "K", "E", "T", "F", "E", "E", "K", "D", "A", "Y", "K", "L", "F", "K", "N", "G", "T", "L", "K", "I", "K", "H", "-", "L", "K", "I", "H", "D", "Q", "D", "S", "Y", "K", "V", "S", "I", "Y", "D", "T", "K", "G", "K", "N", "V", "L", "E", "K", "T", "F", "D", "L", "K", "I", "Q", "E", "R", "V", "S", "E", "P", "K", "I", "S", "W", "T", "C", "I", "N", "T", "T", "L", "T", "C", "E", "V", "M", "N", "G", "T", "D", "P", "E", "L", "N", "L", "Y", "Q", "D", "G", "K", "H", "L", "K", "-", "L", "S", "Q", "R", "V", "I", "T", "H", "K", "W", "T", "T", "S", "L", "S", "A", "K", "F", "K", "C", "T", "A", "G", "N", "K", "V", "S", "K", "E", "S", "R", "M", "E", "T", "V", "S", "C", "P", "E", "K", "G", "L", "D"] - ], - "codon": [ -["AAA", "GAG", "ATT", "AGG", "AAT", "GCT", "TTG", "GAA", "ACC", "TGG", "GGA", "GCG", "CTG", "GGT", "CAG", "GAC", "ATC", "GAC", "TTG", "GAC", "ATT", "CCT", "AGT", "TTT", "CAA", "ATG", "AGT", "GAT", "GAT", "ATT", "GAT", "GAT", "ATA", "AAA", "TGG", "GAG", "AAA", "ACT", "TCA", "GAC", "AAG", "AAA", "AAG", "ATT", "GCA", "CAA", "TTC", "AGA", "AAA", "GAG", "AAG", "GAG", "ACT", "TTC", "GAG", "GAA", "AAA", "GAT", "GCA", "TAT", "AAG", "CTA", "TTT", "AAA", "AAC", "GGA", "ACT", "CTG", "AAA", "ATT", "AAG", "CAT", "---", "CTG", "AAG", "ATC", "CAT", "GAT", "CAG", "GAT", "AGC", "TAC", "AAG", "GTA", "TCA", "ATA", "TAC", "GAT", "ACA", "AAA", "GGA", "AAA", "AAT", "GTG", "TTG", "GAA", "AAA", "ACA", "TTT", "GAT", "TTG", "AAG", "ATT", "CAA", "GAG", "AGG", "GTC", "TCA", "GAA", "CCA", "AAG", "ATC", "TCC", "TGG", "ACT", "TGT", "ATC", "AAC", "ACA", "ACC", "CTG", "ACC", "TGT", "GAA", "GTA", "ATG", "AAT", "GGA", "ACT", "GAC", "CCC", "GAA", "TTA", "AAC", "CTG", "TAT", "CAA", "GAT", "GGG", "AAA", "CAT", "CTA", "AAA", "---", "CTT", "TCT", "CAG", "AGG", "GTC", "ATC", "ACA", "CAC", "AAG", "TGG", "ACC", "ACC", "AGC", "CTG", "AGT", "GCG", "AAA", "TTC", "AAG", "TGC", "ACA", "GCA", "GGG", "AAC", "AAA", "GTC", "AGC", "AAG", "GAA", "TCC", "AGG", "ATG", "GAG", "ACT", "GTC", "AGC", "TGT", "CCA", "GAG", "AAA", "GGT", "CTG", "GAC"] - ], - "nonsynonymous substitution count": [ -[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] - ], - "original name":"Baboon", - "synonymous substitution count": [ -[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] - 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