Mercurial > repos > iuc > hyphy_prime
comparison macros.xml @ 4:e06961ac014b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2413d0043c5d263ecfa75ec0f8614e322fb65f99"
| author | iuc |
|---|---|
| date | Fri, 08 May 2020 18:45:52 -0400 |
| parents | 70aa4bada58d |
| children | 9f566d869e2f |
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| 3:70aa4bada58d | 4:e06961ac014b |
|---|---|
| 90 code</option> | 90 code</option> |
| 91 <option value="Blepharisma-Nuclear">Blepharisma Nuclear | 91 <option value="Blepharisma-Nuclear">Blepharisma Nuclear |
| 92 code</option> | 92 code</option> |
| 93 </param> | 93 </param> |
| 94 </xml> | 94 </xml> |
| 95 | |
| 95 <xml name="branches"> | 96 <xml name="branches"> |
| 96 <param name="branches" type="select" label="Set of branches to test"> | 97 <param name="branches" type="select" label="Set of branches to test"> |
| 97 <option value="All">All branches</option> | 98 <option value="All">All branches</option> |
| 98 <option value="Internal">Internal branches</option> | 99 <option value="Internal">Internal branches</option> |
| 99 <option value="Leaves">Leaf branches</option> | 100 <option value="Leaves">Leaf branches</option> |
| 104 <citations> | 105 <citations> |
| 105 <citation type="doi">10.1093/molbev/msz197</citation> | 106 <citation type="doi">10.1093/molbev/msz197</citation> |
| 106 <yield/> | 107 <yield/> |
| 107 </citations> | 108 </citations> |
| 108 </xml> | 109 </xml> |
| 109 <token name="@VERSION@">2.5.12</token> | 110 <token name="@VERSION@">2.5.14</token> |
| 110 <xml name="requirements"> | 111 <xml name="requirements"> |
| 111 <requirements> | 112 <requirements> |
| 112 <requirement type="package" version="@VERSION@">hyphy</requirement> | 113 <requirement type="package" version="@VERSION@">hyphy</requirement> |
| 113 <yield/> | 114 <yield/> |
| 114 </requirements> | 115 </requirements> |
| 122 exit \$EC | 123 exit \$EC |
| 123 ]]></token> | 124 ]]></token> |
| 124 <token name="@HYPHY_ENVIRONMENT@"><![CDATA[ | 125 <token name="@HYPHY_ENVIRONMENT@"><![CDATA[ |
| 125 export HYPHY=`which hyphy` && | 126 export HYPHY=`which hyphy` && |
| 126 export HYPHY_PATH=`dirname \$HYPHY` && | 127 export HYPHY_PATH=`dirname \$HYPHY` && |
| 127 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token> | 128 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../share/hyphy` &&]]></token> |
| 128 <token name="@HYPHY_INVOCATION@"><![CDATA[ | 129 <token name="@HYPHY_INVOCATION@"><![CDATA[ |
| 129 @HYPHY_ENVIRONMENT@ hyphy LIBPATH=\$HYPHY_LIB | 130 @HYPHY_ENVIRONMENT@ hyphy LIBPATH=\$HYPHY_LIB |
| 130 ]]></token> | 131 ]]></token> |
| 131 </macros> | 132 </macros> |