Mercurial > repos > iuc > hyphy_prime

comparison hyphy_prime.xml @ 26:9d83d1ab0330 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954
author iuc
date Thu, 02 Mar 2023 15:13:50 +0000
parents f207757f9ca2
children
comparison
equal deleted inserted replaced
25:0407236012e5 26:9d83d1ab0330
1 <?xml version="1.0"?> 1 <tool id="hyphy_prime" name="HyPhy-PRIME" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <tool id="hyphy_prime" name="HyPhy-PRIME" version="@TOOL_VERSION@+galaxy1" profile="19.09">
3 <description>Property Informed Models of Evolution</description> 2 <description>Property Informed Models of Evolution</description>
4 <macros> 3 <macros>
5 <import>macros.xml</import> 4 <import>macros.xml</import>
6 </macros> 5 </macros>
7 <expand macro="bio_tools"/> 6 <expand macro="bio_tools"/>
21 ]]></command> 20 ]]></command>
22 <inputs> 21 <inputs>
23 <expand macro="inputs"/> 22 <expand macro="inputs"/>
24 <expand macro="gencode"/> 23 <expand macro="gencode"/>
25 <expand macro="branches"/> 24 <expand macro="branches"/>
26 <param name="prop_set" type="select" label="Biochemical properties to use"> 25 <param argument="--properties" name="prop_set" type="select" label="Biochemical properties to use">
27 <option value="Atchley">Atchley</option> 26 <option value="Atchley">Atchley</option>
28 <option value="LCAP">LCAP</option> 27 <option value="LCAP">LCAP</option>
29 </param> 28 </param>
30 <param name="p_value" type="float" value=".1" min="0" max="1" label="P-value threshold"/> 29 <param argument="--pvalue" name="p_value" type="float" value=".1" min="0" max="1" label="P-value threshold"/>
31 <param argument="--impute-states" type="boolean" truevalue="Yes" falsevalue="No" label="Use site-level model fits to impute likely character states for each sequence"/> 30 <param argument="--impute-states" type="boolean" truevalue="Yes" falsevalue="No" label="Use site-level model fits to impute likely character states for each sequence"/>
32 </inputs> 31 </inputs>
33 <outputs> 32 <outputs>
34 <data name="prime_output" format="hyphy_results.json" /> 33 <data name="prime_output" format="hyphy_results.json" />
35 </outputs> 34 </outputs>