diff hyphy_prime.xml @ 26:9d83d1ab0330 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954

--- a/hyphy_prime.xml	Thu Aug 18 14:03:53 2022 +0000
+++ b/hyphy_prime.xml	Thu Mar 02 15:13:50 2023 +0000
@@ -1,5 +1,4 @@
-<?xml version="1.0"?>
-<tool id="hyphy_prime" name="HyPhy-PRIME" version="@TOOL_VERSION@+galaxy1" profile="19.09">
+<tool id="hyphy_prime" name="HyPhy-PRIME" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Property Informed Models of Evolution</description>
     <macros>
         <import>macros.xml</import>
@@ -23,11 +22,11 @@
         <expand macro="inputs"/>
         <expand macro="gencode"/>
         <expand macro="branches"/>
-        <param name="prop_set" type="select" label="Biochemical properties to use">
+        <param argument="--properties" name="prop_set" type="select" label="Biochemical properties to use">
             <option value="Atchley">Atchley</option>
             <option value="LCAP">LCAP</option>
         </param>
-        <param name="p_value" type="float" value=".1" min="0" max="1" label="P-value threshold"/>
+        <param argument="--pvalue" name="p_value" type="float" value=".1" min="0" max="1" label="P-value threshold"/>
         <param argument="--impute-states" type="boolean" truevalue="Yes" falsevalue="No" label="Use site-level model fits to impute likely character states for each sequence"/>
     </inputs>
     <outputs>