comparison hyphy_relax.xml @ 2:8e92afe83af9 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f14f2bae2b27dc04e574803c7d4442a64cfe43e4"

1:1da578d6a253

<?xml version="1.0"?>
<tool id="hyphy_relax" name="HyPhy-RELAX" version="@VERSION@+galaxy0">
    <description>Detect relaxed selection in a codon-based
    phylogenetic framework</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <command detect_errors="exit_code"><![CDATA[
        ln -s '$input_file' relax_input.fa &&
        ln -s '$input_nhx' relax_input.nhx &&
        @HYPHY_INVOCATION@ relax
            --alignment ./relax_input.fa
            --tree ./relax_input.nhx
            --models '$analysisType'
            #if $treeAnnotations == "2":
                --test TEST

2:8e92afe83af9

<?xml version="1.0"?>
<tool id="hyphy_relax" name="HyPhy-RELAX" version="@VERSION@+galaxy1">
    <description>Detect relaxed selection in a codon-based
    phylogenetic framework</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <command detect_errors="exit_code"><![CDATA[
        ln -s '$input_file' relax_input.fa &&
        ln -s '$input_nhx' relax_input.nhx &&
        hyphy relax
            --alignment ./relax_input.fa
            --tree ./relax_input.nhx
            --models '$analysisType'
            #if $treeAnnotations == "2":
                --test TEST