Mercurial > repos > iuc > hyphy_sm19
comparison test-data/sm19-in1.nhx @ 0:ae7c42d49717 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
author | iuc |
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date | Wed, 21 Aug 2019 12:25:55 -0400 (2019-08-21) |
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-1:000000000000 | 0:ae7c42d49717 |
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1 #NEXUS | |
2 begin taxa; | |
3 dimensions ntax=50; | |
4 taxlabels | |
5 C019-B2_10_1[&!color=#ff0000] | |
6 C019-B2_13_1[&!color=#ff0000] | |
7 C019-B2_16_1[&!color=#ff0000] | |
8 C019-B2_17_3[&!color=#ff0000] | |
9 C019-B2_18_1[&!color=#ff0000] | |
10 C019-B2_1_2[&!color=#ff0000] | |
11 C019-B2_24_1[&!color=#ff0000] | |
12 C019-B2_28_1[&!color=#ff0000] | |
13 C019-B2_29_1[&!color=#ff0000] | |
14 C019-B2_31_1[&!color=#ff0000] | |
15 C019-B2_32_1[&!color=#ff0000] | |
16 C019-B2_34_1[&!color=#ff0000] | |
17 C019-B2_35_1[&!color=#ff0000] | |
18 C019-B2_42_2[&!color=#ff0000] | |
19 C019-B2_43_2[&!color=#ff0000] | |
20 C019-B2_45_1[&!color=#ff0000] | |
21 C019-B2_46_2[&!color=#ff0000] | |
22 C019-B2_47_3[&!color=#ff0000] | |
23 C019-B2_4_1[&!color=#ff0000] | |
24 C019-B2_52_1[&!color=#ff0000] | |
25 C019-B2_53_1[&!color=#ff0000] | |
26 C019-B2_54_1[&!color=#ff0000] | |
27 C019-B2_5_1[&!color=#ff0000] | |
28 C019-B2_6_3[&!color=#ff0000] | |
29 C019-B2_9_1[&!color=#ff0000] | |
30 C019-S2_10_1[&!color=#0000ff] | |
31 C019-S2_11_1[&!color=#0000ff] | |
32 C019-S2_12_2[&!color=#0000ff] | |
33 C019-S2_13_1[&!color=#0000ff] | |
34 C019-S2_14_1[&!color=#0000ff] | |
35 C019-S2_15_4[&!color=#0000ff] | |
36 C019-S2_16_1[&!color=#0000ff] | |
37 C019-S2_17_1[&!color=#0000ff] | |
38 C019-S2_18_2[&!color=#0000ff] | |
39 C019-S2_19_1[&!color=#0000ff] | |
40 C019-S2_1_1[&!color=#0000ff] | |
41 C019-S2_20_2[&!color=#0000ff] | |
42 C019-S2_21_1[&!color=#0000ff] | |
43 C019-S2_22_1[&!color=#0000ff] | |
44 C019-S2_23_2[&!color=#0000ff] | |
45 C019-S2_24_1[&!color=#0000ff] | |
46 C019-S2_25_2[&!color=#0000ff] | |
47 C019-S2_2_1[&!color=#0000ff] | |
48 C019-S2_3_1[&!color=#0000ff] | |
49 C019-S2_4_1[&!color=#0000ff] | |
50 C019-S2_5_1[&!color=#0000ff] | |
51 C019-S2_6_1[&!color=#0000ff] | |
52 C019-S2_7_1[&!color=#0000ff] | |
53 C019-S2_8_1[&!color=#0000ff] | |
54 C019-S2_9_1[&!color=#0000ff] | |
55 ; | |
56 end; | |
57 | |
58 begin trees; | |
59 tree tree_1 = [&R] ((((((C019-B2_35_1:0.005858,C019-B2_52_1:0.001773):9.4E-4,((((((C019-B2_28_1:0.002896,C019-B2_29_1:9.09E-4):0.004372,C019-B2_31_1:0.003387):0.001252,C019-S2_9_1:0.001965):4.28E-4,C019-B2_34_1:0.003365):0.00173,C019-S2_2_1:0.011763):5.94E-4,((((C019-B2_4_1:0.002924,C019-B2_6_3:8.81E-4):0.001821,C019-B2_5_1:0.001994):0.006052,C019-S2_1_1:0.011533):0.002707,((C019-S2_4_1:0.006447,C019-S2_6_1:0.00696):0.001115,C019-S2_7_1:0.004624):0.003256):0.001452):0.002006):3.96E-4,((C019-S2_10_1:0.005429,C019-S2_12_2:3.52E-4):9.31E-4,C019-B2_42_2:9.87E-4):6.51E-4):5.28E-4,(C019-B2_53_1:0.002654,C019-B2_54_1:0.001151):0.002202):3.98E-4,((((((C019-B2_9_1:0.003599,C019-B2_10_1:0.002149):0.003701,C019-B2_1_2:0.011845):0.001658,C019-S2_3_1:0.009874):1.58E-4,C019-S2_5_1:0.009998):2.67E-4,(((C019-B2_17_3:0.0,C019-S2_22_1:0.0):6.76E-4,C019-B2_16_1:0.003129):2.62E-4,(((((C019-B2_18_1:0.0,C019-S2_25_2:0.0):3.0E-5,C019-S2_24_1:-3.0E-5):7.69E-4,C019-S2_23_2:0.003047):4.93E-4,(((((C019-B2_24_1:0.004304,C019-S2_19_1:-0.002103):0.00459,C019-S2_17_1:0.00129):0.002822,C019-S2_18_2:0.004477):8.52E-4,C019-S2_21_1:0.001446):8.3E-4,C019-S2_20_2:0.003028):0.002252):0.001275,C019-B2_13_1:0.006181):9.2E-4):0.003349):0.001411,C019-S2_13_1:-4.68E-4):0.001963):3.46E-4,(((C019-B2_45_1:8.37E-4,C019-S2_8_1:0.006794):0.001393,C019-S2_14_1:5.17E-4):3.77E-4,(((C019-B2_32_1:0.005635,C019-B2_43_2:0.001995):9.13E-4,C019-S2_11_1:0.002993):5.52E-4,(((C019-B2_46_2:0.0,C019-S2_15_4:0.0):0.001576,C019-S2_16_1:0.002229):0.001073,C019-B2_47_3:8.77E-4):8.62E-4):7.32E-4):3.46E-4); | |
60 end; | |
61 | |
62 begin figtree; | |
63 set appearance.backgroundColorAttribute="Default"; | |
64 set appearance.backgroundColour=#ffffff; | |
65 set appearance.branchColorAttribute="User selection"; | |
66 set appearance.branchColorGradient=false; | |
67 set appearance.branchLineWidth=1.0; | |
68 set appearance.branchMinLineWidth=0.0; | |
69 set appearance.branchWidthAttribute="Fixed"; | |
70 set appearance.foregroundColour=#000000; | |
71 set appearance.hilightingGradient=false; | |
72 set appearance.selectionColour=#2d3680; | |
73 set branchLabels.colorAttribute="User selection"; | |
74 set branchLabels.displayAttribute="Branch times"; | |
75 set branchLabels.fontName="sansserif"; | |
76 set branchLabels.fontSize=8; | |
77 set branchLabels.fontStyle=0; | |
78 set branchLabels.isShown=false; | |
79 set branchLabels.significantDigits=4; | |
80 set layout.expansion=0; | |
81 set layout.layoutType="RECTILINEAR"; | |
82 set layout.zoom=0; | |
83 set legend.attribute=null; | |
84 set legend.fontSize=10.0; | |
85 set legend.isShown=false; | |
86 set legend.significantDigits=4; | |
87 set nodeBars.barWidth=4.0; | |
88 set nodeBars.displayAttribute=null; | |
89 set nodeBars.isShown=false; | |
90 set nodeLabels.colorAttribute="User selection"; | |
91 set nodeLabels.displayAttribute="Node ages"; | |
92 set nodeLabels.fontName="sansserif"; | |
93 set nodeLabels.fontSize=8; | |
94 set nodeLabels.fontStyle=0; | |
95 set nodeLabels.isShown=false; | |
96 set nodeLabels.significantDigits=4; | |
97 set nodeShapeExternal.colourAttribute="User selection"; | |
98 set nodeShapeExternal.isShown=false; | |
99 set nodeShapeExternal.minSize=10.0; | |
100 set nodeShapeExternal.scaleType=Width; | |
101 set nodeShapeExternal.shapeType=Circle; | |
102 set nodeShapeExternal.size=4.0; | |
103 set nodeShapeExternal.sizeAttribute="Fixed"; | |
104 set nodeShapeInternal.colourAttribute="User selection"; | |
105 set nodeShapeInternal.isShown=false; | |
106 set nodeShapeInternal.minSize=10.0; | |
107 set nodeShapeInternal.scaleType=Width; | |
108 set nodeShapeInternal.shapeType=Circle; | |
109 set nodeShapeInternal.size=4.0; | |
110 set nodeShapeInternal.sizeAttribute="Fixed"; | |
111 set polarLayout.alignTipLabels=false; | |
112 set polarLayout.angularRange=0; | |
113 set polarLayout.rootAngle=0; | |
114 set polarLayout.rootLength=100; | |
115 set polarLayout.showRoot=true; | |
116 set radialLayout.spread=0.0; | |
117 set rectilinearLayout.alignTipLabels=false; | |
118 set rectilinearLayout.curvature=0; | |
119 set rectilinearLayout.rootLength=100; | |
120 set scale.offsetAge=0.0; | |
121 set scale.rootAge=1.0; | |
122 set scale.scaleFactor=1.0; | |
123 set scale.scaleRoot=false; | |
124 set scaleAxis.automaticScale=true; | |
125 set scaleAxis.fontSize=8.0; | |
126 set scaleAxis.isShown=false; | |
127 set scaleAxis.lineWidth=1.0; | |
128 set scaleAxis.majorTicks=1.0; | |
129 set scaleAxis.minorTicks=0.5; | |
130 set scaleAxis.origin=0.0; | |
131 set scaleAxis.reverseAxis=false; | |
132 set scaleAxis.showGrid=true; | |
133 set scaleBar.automaticScale=true; | |
134 set scaleBar.fontSize=10.0; | |
135 set scaleBar.isShown=true; | |
136 set scaleBar.lineWidth=1.0; | |
137 set scaleBar.scaleRange=0.0; | |
138 set tipLabels.colorAttribute="User selection"; | |
139 set tipLabels.displayAttribute="Names"; | |
140 set tipLabels.fontName="sansserif"; | |
141 set tipLabels.fontSize=8; | |
142 set tipLabels.fontStyle=0; | |
143 set tipLabels.isShown=true; | |
144 set tipLabels.significantDigits=4; | |
145 set trees.order=false; | |
146 set trees.orderType="increasing"; | |
147 set trees.rooting=false; | |
148 set trees.rootingType="User Selection"; | |
149 set trees.transform=false; | |
150 set trees.transformType="cladogram"; | |
151 end; | |
152 |