comparison hyphy_strike_ambigs.xml @ 11:31e7f5a25db3 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954

10:f5bbd4b34541

<?xml version="1.0"?>
<tool id="hyphy_strike_ambigs" name="Replace ambiguous codons" version="@TOOL_VERSION@">
    <description>in a multiple alignment using HyPhy</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>

        hyphy '$__tool_directory__/scripts/strike-ambigs.bf'
            --alignment '$alignment' --output '$output'
        @ERRORS@
        ]]></command>
    <inputs>
        <param name="alignment" type="data" format="fasta" label="Input alignment" />
    </inputs>
    <outputs>
        <data name="output" format="fasta" />
    </outputs>
    <tests>

11:31e7f5a25db3

<tool id="hyphy_strike_ambigs" name="Replace ambiguous codons" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>in a multiple alignment using HyPhy</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>

        hyphy '$__tool_directory__/scripts/strike-ambigs.bf'
            --alignment '$alignment' --output '$output'
        @ERRORS@
        ]]></command>
    <inputs>
        <param  argument="--alignment" type="data" format="fasta" label="Input alignment" />
    </inputs>
    <outputs>
        <data name="output" format="fasta" />
    </outputs>
    <tests>