comparison test-data/meme-in1.fa @ 0:7c86ceaf523c draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
author iuc
date Tue, 20 Apr 2021 10:27:46 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:7c86ceaf523c
1 >CHICKEN_HEBEI_326_2005
2 ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGA
3 TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
4 CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAG
5 AAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAAT
6 TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
7 ACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
8 CCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACT
9 GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
10 CCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCA
11 TGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
12 CAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCA
13 ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAG
14 GCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGG
15 AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
16 AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
17 CCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGA
18 ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTG
19 AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
20 ATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGA
21 ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCA
22 GAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGA
23 GCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
24 GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
25 AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
26 ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
27 TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
28 TCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAAT
29 GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA
30 GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
31 TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
32 GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
33 GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
34 CAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCT
35 GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
36 >MALLARD_VIETNAM_16_2003
37 ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA
38 TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
39 CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
40 AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT
41 TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
42 ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
43 CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATT
44 GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
45 CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA
46 TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGT
47 CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
48 ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
49 GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG
50 GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA
51 AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
52 CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
53 ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
54 AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
55 ATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGA
56 ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
57 GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA
58 GCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTG
59 GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
60 AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
61 ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
62 CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
63 TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
64 GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
65 GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
66 TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
67 GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
68 GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
69 CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
70 GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA---
71 >CHICKEN_CK_160_2005
72 ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA
73 TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA
74 CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
75 AAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAAT
76 TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTG
77 ATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
78 CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT
79 GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
80 CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA
81 TGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
82 CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
83 ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
84 GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGG
85 GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA
86 AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
87 CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
88 ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
89 AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
90 ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA
91 ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA
92 GAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGA
93 GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
94 GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
95 AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
96 ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
97 CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
98 TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
99 GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
100 GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
101 TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAAC
102 GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
103 GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
104 CAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
105 GGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT
106 >CK_HK_WF157_2003
107 ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA
108 TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
109 CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
110 AAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT
111 TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG
112 ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
113 CCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACT
114 GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
115 CCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
116 TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
117 CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
118 ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
119 GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
120 AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
121 AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
122 CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
123 ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG
124 AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
125 ATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGA
126 ATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCA
127 GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
128 GCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
129 GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
130 AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
131 ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
132 TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT
133 TCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAAT
134 GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
135 GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT
136 TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
137 GGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
138 GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
139 CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
140 GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------
141 >SWINE_ANHUI_1_2004
142 ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGA
143 TCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
144 CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAA
145 AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT
146 TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG
147 ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
148 CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT
149 GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
150 CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
151 TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
152 CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
153 ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCG
154 GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
155 GACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
156 AAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAA
157 CCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
158 ATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTG
159 AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCG
160 ATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
161 ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA
162 GAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA
163 GCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTG
164 GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
165 AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG
166 ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
167 TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
168 TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
169 GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
170 GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
171 TCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
172 GGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGA
173 GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
174 CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCT
175 GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT