diff hyphy_summary.xml @ 3:bd90215b7d15 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit ec5db8349483b2cd46f9da23abe6cefcf65bc714"

--- a/hyphy_summary.xml	Fri Jun 18 15:37:03 2021 +0000
+++ b/hyphy_summary.xml	Sat Jul 03 08:53:45 2021 +0000
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<tool id="hyphy_summary" version="1.1.0" name="HyPhy-Summary" profile="21.01">
+<tool id="hyphy_summary" version="1.2.0" name="HyPhy-Summary" profile="21.01">
     <description>generate summary report of HyPhy analyses</description>
     <requirements>
-        <requirement type="package" version="0.19.7">python-bioext</requirement>
+        <requirement type="package" version="0.20.1">python-bioext</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         python '$__tool_directory__/scripts/hyphy_summary.py' 
@@ -97,19 +97,19 @@
                 <param argument="--bgm" type="data" format="json,hyphy_results.json" optional="true" label="HyPhy-BGM output dataset" />
             </when>
             <when value="merge">
-                <param argument="--summary-inputs" type="data" format="hyphy_results.json" multiple="true" label="Segment annotations to merge" />
-                <param argument="--annotation-inputs" type="data" format="hyphy_results.json" multiple="true" label="Site annotations to merge" />
+                <param argument="--summary-inputs" type="data" format="hyphy_results.json" multiple="true" label="Summaries to merge" />
+                <param argument="--annotation-inputs" type="data" format="hyphy_results.json" multiple="true" label="Annotations to merge" />
             </when>
         </conditional>
     </inputs>
     <outputs>
-        <data name="summary" format="hyphy_results.json" label="${tool.name} on ${on_string} - Segment annotations" />
-        <data name="annotation" format="hyphy_results.json" label="${tool.name} on ${on_string} - Site annotations" />
+        <data name="summary" format="hyphy_results.json" label="${tool.name} on ${on_string} - Summary" />
+        <data name="annotation" format="hyphy_results.json" label="${tool.name} on ${on_string} - Annotation" />
     </outputs>
     <tests>
         <test>
             <param name="mode" value="summary" />
-            <param name="name" value="epi_isl_1009769" />
+            <param name="name" value="REFERENCE" />
             <param name="gene" value="nsp8" />
             <param name="combined" value="summary/nsp8.combined.fas" />
             <param name="fade" value="summary/nsp8.FADE.json" />
@@ -128,7 +128,7 @@
         </test>
         <test>
             <param name="mode" value="summary" />
-            <param name="name" value="epi_isl_1009769" />
+            <param name="name" value="REFERENCE" />
             <param name="gene" value="ORF6" />
             <param name="combined" value="summary/ORF6.combined.fas" />
             <param name="fade" value="summary/ORF6.FADE.json" />
@@ -140,7 +140,7 @@
         </test>
         <test>
             <param name="mode" value="summary" />
-            <param name="name" value="epi_isl_1009769" />
+            <param name="name" value="REFERENCE" />
             <param name="gene" value="nsp7" />
             <param name="combined" value="summary/nsp7.combined.fas" />
             <param name="fade" value="summary/nsp7.FADE.json" />