Mercurial > repos > iuc > hyphy_summary
view test-data/sm19-in1.nhx @ 0:f304c108aa1f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
author | iuc |
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date | Wed, 09 Jun 2021 07:03:54 +0000 |
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#NEXUS begin taxa; dimensions ntax=50; taxlabels C019-B2_10_1[&!color=#ff0000] C019-B2_13_1[&!color=#ff0000] C019-B2_16_1[&!color=#ff0000] C019-B2_17_3[&!color=#ff0000] C019-B2_18_1[&!color=#ff0000] C019-B2_1_2[&!color=#ff0000] C019-B2_24_1[&!color=#ff0000] C019-B2_28_1[&!color=#ff0000] C019-B2_29_1[&!color=#ff0000] C019-B2_31_1[&!color=#ff0000] C019-B2_32_1[&!color=#ff0000] C019-B2_34_1[&!color=#ff0000] C019-B2_35_1[&!color=#ff0000] C019-B2_42_2[&!color=#ff0000] C019-B2_43_2[&!color=#ff0000] C019-B2_45_1[&!color=#ff0000] C019-B2_46_2[&!color=#ff0000] C019-B2_47_3[&!color=#ff0000] C019-B2_4_1[&!color=#ff0000] C019-B2_52_1[&!color=#ff0000] C019-B2_53_1[&!color=#ff0000] C019-B2_54_1[&!color=#ff0000] C019-B2_5_1[&!color=#ff0000] C019-B2_6_3[&!color=#ff0000] C019-B2_9_1[&!color=#ff0000] C019-S2_10_1[&!color=#0000ff] C019-S2_11_1[&!color=#0000ff] C019-S2_12_2[&!color=#0000ff] C019-S2_13_1[&!color=#0000ff] C019-S2_14_1[&!color=#0000ff] C019-S2_15_4[&!color=#0000ff] C019-S2_16_1[&!color=#0000ff] C019-S2_17_1[&!color=#0000ff] C019-S2_18_2[&!color=#0000ff] C019-S2_19_1[&!color=#0000ff] C019-S2_1_1[&!color=#0000ff] C019-S2_20_2[&!color=#0000ff] C019-S2_21_1[&!color=#0000ff] C019-S2_22_1[&!color=#0000ff] C019-S2_23_2[&!color=#0000ff] C019-S2_24_1[&!color=#0000ff] C019-S2_25_2[&!color=#0000ff] C019-S2_2_1[&!color=#0000ff] C019-S2_3_1[&!color=#0000ff] C019-S2_4_1[&!color=#0000ff] C019-S2_5_1[&!color=#0000ff] C019-S2_6_1[&!color=#0000ff] C019-S2_7_1[&!color=#0000ff] C019-S2_8_1[&!color=#0000ff] C019-S2_9_1[&!color=#0000ff] ; end; begin trees; tree tree_1 = [&R] ((((((C019-B2_35_1:0.005858,C019-B2_52_1:0.001773):9.4E-4,((((((C019-B2_28_1:0.002896,C019-B2_29_1:9.09E-4):0.004372,C019-B2_31_1:0.003387):0.001252,C019-S2_9_1:0.001965):4.28E-4,C019-B2_34_1:0.003365):0.00173,C019-S2_2_1:0.011763):5.94E-4,((((C019-B2_4_1:0.002924,C019-B2_6_3:8.81E-4):0.001821,C019-B2_5_1:0.001994):0.006052,C019-S2_1_1:0.011533):0.002707,((C019-S2_4_1:0.006447,C019-S2_6_1:0.00696):0.001115,C019-S2_7_1:0.004624):0.003256):0.001452):0.002006):3.96E-4,((C019-S2_10_1:0.005429,C019-S2_12_2:3.52E-4):9.31E-4,C019-B2_42_2:9.87E-4):6.51E-4):5.28E-4,(C019-B2_53_1:0.002654,C019-B2_54_1:0.001151):0.002202):3.98E-4,((((((C019-B2_9_1:0.003599,C019-B2_10_1:0.002149):0.003701,C019-B2_1_2:0.011845):0.001658,C019-S2_3_1:0.009874):1.58E-4,C019-S2_5_1:0.009998):2.67E-4,(((C019-B2_17_3:0.0,C019-S2_22_1:0.0):6.76E-4,C019-B2_16_1:0.003129):2.62E-4,(((((C019-B2_18_1:0.0,C019-S2_25_2:0.0):3.0E-5,C019-S2_24_1:-3.0E-5):7.69E-4,C019-S2_23_2:0.003047):4.93E-4,(((((C019-B2_24_1:0.004304,C019-S2_19_1:-0.002103):0.00459,C019-S2_17_1:0.00129):0.002822,C019-S2_18_2:0.004477):8.52E-4,C019-S2_21_1:0.001446):8.3E-4,C019-S2_20_2:0.003028):0.002252):0.001275,C019-B2_13_1:0.006181):9.2E-4):0.003349):0.001411,C019-S2_13_1:-4.68E-4):0.001963):3.46E-4,(((C019-B2_45_1:8.37E-4,C019-S2_8_1:0.006794):0.001393,C019-S2_14_1:5.17E-4):3.77E-4,(((C019-B2_32_1:0.005635,C019-B2_43_2:0.001995):9.13E-4,C019-S2_11_1:0.002993):5.52E-4,(((C019-B2_46_2:0.0,C019-S2_15_4:0.0):0.001576,C019-S2_16_1:0.002229):0.001073,C019-B2_47_3:8.77E-4):8.62E-4):7.32E-4):3.46E-4); end; begin figtree; set appearance.backgroundColorAttribute="Default"; set appearance.backgroundColour=#ffffff; set appearance.branchColorAttribute="User selection"; set appearance.branchColorGradient=false; set appearance.branchLineWidth=1.0; set appearance.branchMinLineWidth=0.0; set appearance.branchWidthAttribute="Fixed"; set appearance.foregroundColour=#000000; set appearance.hilightingGradient=false; set appearance.selectionColour=#2d3680; set branchLabels.colorAttribute="User selection"; set branchLabels.displayAttribute="Branch times"; set branchLabels.fontName="sansserif"; set branchLabels.fontSize=8; set branchLabels.fontStyle=0; set branchLabels.isShown=false; set branchLabels.significantDigits=4; set layout.expansion=0; set layout.layoutType="RECTILINEAR"; set layout.zoom=0; set legend.attribute=null; set legend.fontSize=10.0; set legend.isShown=false; set legend.significantDigits=4; set nodeBars.barWidth=4.0; set nodeBars.displayAttribute=null; set nodeBars.isShown=false; set nodeLabels.colorAttribute="User selection"; set nodeLabels.displayAttribute="Node ages"; set nodeLabels.fontName="sansserif"; set nodeLabels.fontSize=8; set nodeLabels.fontStyle=0; set nodeLabels.isShown=false; set nodeLabels.significantDigits=4; set nodeShapeExternal.colourAttribute="User selection"; set nodeShapeExternal.isShown=false; set nodeShapeExternal.minSize=10.0; set nodeShapeExternal.scaleType=Width; set nodeShapeExternal.shapeType=Circle; set nodeShapeExternal.size=4.0; set nodeShapeExternal.sizeAttribute="Fixed"; set nodeShapeInternal.colourAttribute="User selection"; set nodeShapeInternal.isShown=false; set nodeShapeInternal.minSize=10.0; set nodeShapeInternal.scaleType=Width; set nodeShapeInternal.shapeType=Circle; set nodeShapeInternal.size=4.0; set nodeShapeInternal.sizeAttribute="Fixed"; set polarLayout.alignTipLabels=false; set polarLayout.angularRange=0; set polarLayout.rootAngle=0; set polarLayout.rootLength=100; set polarLayout.showRoot=true; set radialLayout.spread=0.0; set rectilinearLayout.alignTipLabels=false; set rectilinearLayout.curvature=0; set rectilinearLayout.rootLength=100; set scale.offsetAge=0.0; set scale.rootAge=1.0; set scale.scaleFactor=1.0; set scale.scaleRoot=false; set scaleAxis.automaticScale=true; set scaleAxis.fontSize=8.0; set scaleAxis.isShown=false; set scaleAxis.lineWidth=1.0; set scaleAxis.majorTicks=1.0; set scaleAxis.minorTicks=0.5; set scaleAxis.origin=0.0; set scaleAxis.reverseAxis=false; set scaleAxis.showGrid=true; set scaleBar.automaticScale=true; set scaleBar.fontSize=10.0; set scaleBar.isShown=true; set scaleBar.lineWidth=1.0; set scaleBar.scaleRange=0.0; set tipLabels.colorAttribute="User selection"; set tipLabels.displayAttribute="Names"; set tipLabels.fontName="sansserif"; set tipLabels.fontSize=8; set tipLabels.fontStyle=0; set tipLabels.isShown=true; set tipLabels.significantDigits=4; set trees.order=false; set trees.orderType="increasing"; set trees.rooting=false; set trees.rootingType="User Selection"; set trees.transform=false; set trees.transformType="cladogram"; end;