view test-data/NC_004668_137848_164286_detected_ME.summary @ 5:28e82853c217 draft

planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit 0460711184f579a316f4393e4cd0663886295d48

##################### Main parameters of the ICEscreen analysis #####################
Maximum distance in CDS between consecutive SPs within a segments:	100
Maximum distance in CDS between consecutive SPs within an IME element:	14


##################### ICEscreen statistics for genome accession NC_004668.1 #####################

##### Mobile elements #####
## Number of complete elements
Complete ICE (4 types of SP):	1
Complete IME (R+I, R+C+I with distance between consecutive SPs <= 14 CDSs):	0
## Number of complete modules
Conjugation module (R+C+V):	0
Mobilizable element (R+C with distance between consecutive SPs <= 14 CDS):	0
## Number of partial elements
Partial ICE (at least V):	0
Other partial element (R+C, R+V, V+C with distance between consecutive SPs > 14 CDS):	0
## Composite elements
Total nested elements (partial or complete):	0
Host element:	0
Guest element:	0
Element that are both host and guest:	0

##### Signature proteins (SPs) #####
## Total SPs detected
Total SPs:	4
Total Integrase:	1
Total Relaxase:	1
Total Coupling protein:	1
Total VirB4:	1
Fragmented SPs:	0
## Unassigned SPs
Unassigned SPs:	0
Unassigned Integrase:	0
Unassigned Relaxase:	0
Unassigned Coupling protein:	0
Unassigned VirB4:	0

##### Segments #####
Number of segments with one element:	1
Number of segments with several elements:	0
Number of segments with nested elements:	0
Number of segments with exclusively isolated SPs to manually verify:	0