annotate icqsol_compose_shapes.py @ 0:1574fdcc16df draft default tip

Uploaded
author iuc
date Tue, 23 Aug 2016 14:59:12 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1574fdcc16df Uploaded
iuc
parents:
diff changeset
1 #!/usr/bin/env python
1574fdcc16df Uploaded
iuc
parents:
diff changeset
2 import argparse
1574fdcc16df Uploaded
iuc
parents:
diff changeset
3 import shutil
1574fdcc16df Uploaded
iuc
parents:
diff changeset
4
1574fdcc16df Uploaded
iuc
parents:
diff changeset
5 import icqsol_utils
1574fdcc16df Uploaded
iuc
parents:
diff changeset
6
1574fdcc16df Uploaded
iuc
parents:
diff changeset
7 # Parse Command Line.
1574fdcc16df Uploaded
iuc
parents:
diff changeset
8 parser = argparse.ArgumentParser()
1574fdcc16df Uploaded
iuc
parents:
diff changeset
9 parser.add_argument('--expression', dest='expression', help='Composition expression')
1574fdcc16df Uploaded
iuc
parents:
diff changeset
10 parser.add_argument('--shape_dataset', dest='shape_datasets', action='append', nargs=4, help='Shape datasets selected from history')
1574fdcc16df Uploaded
iuc
parents:
diff changeset
11 parser.add_argument('--output', dest='output', help='Output dataset')
1574fdcc16df Uploaded
iuc
parents:
diff changeset
12 parser.add_argument('--output_vtk_type', dest='output_vtk_type', help='Output file format and type')
1574fdcc16df Uploaded
iuc
parents:
diff changeset
13
1574fdcc16df Uploaded
iuc
parents:
diff changeset
14 args = parser.parse_args()
1574fdcc16df Uploaded
iuc
parents:
diff changeset
15
1574fdcc16df Uploaded
iuc
parents:
diff changeset
16 tmp_dir = icqsol_utils.get_temp_dir()
1574fdcc16df Uploaded
iuc
parents:
diff changeset
17 shape_tuples = []
1574fdcc16df Uploaded
iuc
parents:
diff changeset
18 shape_mgr = icqsol_utils.get_shape_manager()
1574fdcc16df Uploaded
iuc
parents:
diff changeset
19
1574fdcc16df Uploaded
iuc
parents:
diff changeset
20 # Load the shapes.
1574fdcc16df Uploaded
iuc
parents:
diff changeset
21 for (expression_var, dataset_path, galaxy_ext, vtk_dataset_type) in args.shape_datasets:
1574fdcc16df Uploaded
iuc
parents:
diff changeset
22 # Define the file format and type.
1574fdcc16df Uploaded
iuc
parents:
diff changeset
23 format, file_type = icqsol_utils.get_format_and_type(galaxy_ext)
1574fdcc16df Uploaded
iuc
parents:
diff changeset
24 if format == icqsol_utils.VTK:
1574fdcc16df Uploaded
iuc
parents:
diff changeset
25 shape_mgr.setReader(file_format=format, vtk_dataset_type=vtk_dataset_type)
1574fdcc16df Uploaded
iuc
parents:
diff changeset
26 else:
1574fdcc16df Uploaded
iuc
parents:
diff changeset
27 shape_mgr.setReader(file_format=format)
1574fdcc16df Uploaded
iuc
parents:
diff changeset
28 icqsol_path = icqsol_utils.get_input_file_path(tmp_dir, dataset_path, format)
1574fdcc16df Uploaded
iuc
parents:
diff changeset
29 shape_tuple = (expression_var, shape_mgr.loadAsShape(icqsol_path))
1574fdcc16df Uploaded
iuc
parents:
diff changeset
30 shape_tuples.append(shape_tuple)
1574fdcc16df Uploaded
iuc
parents:
diff changeset
31
1574fdcc16df Uploaded
iuc
parents:
diff changeset
32 # Define the output file format and type.
1574fdcc16df Uploaded
iuc
parents:
diff changeset
33 output_format, output_file_type = icqsol_utils.get_format_and_type(args.output_vtk_type)
1574fdcc16df Uploaded
iuc
parents:
diff changeset
34 tmp_output_path = icqsol_utils.get_temporary_file_path(tmp_dir, output_format)
1574fdcc16df Uploaded
iuc
parents:
diff changeset
35
1574fdcc16df Uploaded
iuc
parents:
diff changeset
36 shape_mgr.setWriter(file_format=output_format, vtk_dataset_type=icqsol_utils.POLYDATA)
1574fdcc16df Uploaded
iuc
parents:
diff changeset
37
1574fdcc16df Uploaded
iuc
parents:
diff changeset
38 # Compose the shapes.
1574fdcc16df Uploaded
iuc
parents:
diff changeset
39 composite_shape = shape_mgr.composeShapes(shape_tuples, args.expression)
1574fdcc16df Uploaded
iuc
parents:
diff changeset
40
1574fdcc16df Uploaded
iuc
parents:
diff changeset
41 # Save the output.
1574fdcc16df Uploaded
iuc
parents:
diff changeset
42 shape_mgr.saveShape(shape=composite_shape, file_name=tmp_output_path, file_type=output_file_type)
1574fdcc16df Uploaded
iuc
parents:
diff changeset
43 shutil.move(tmp_output_path, args.output)