Mercurial > repos > iuc > icqsol_compose_shapes
view icqsol_compose_shapes.py @ 0:1574fdcc16df draft default tip
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author | iuc |
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date | Tue, 23 Aug 2016 14:59:12 -0400 |
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#!/usr/bin/env python import argparse import shutil import icqsol_utils # Parse Command Line. parser = argparse.ArgumentParser() parser.add_argument('--expression', dest='expression', help='Composition expression') parser.add_argument('--shape_dataset', dest='shape_datasets', action='append', nargs=4, help='Shape datasets selected from history') parser.add_argument('--output', dest='output', help='Output dataset') parser.add_argument('--output_vtk_type', dest='output_vtk_type', help='Output file format and type') args = parser.parse_args() tmp_dir = icqsol_utils.get_temp_dir() shape_tuples = [] shape_mgr = icqsol_utils.get_shape_manager() # Load the shapes. for (expression_var, dataset_path, galaxy_ext, vtk_dataset_type) in args.shape_datasets: # Define the file format and type. format, file_type = icqsol_utils.get_format_and_type(galaxy_ext) if format == icqsol_utils.VTK: shape_mgr.setReader(file_format=format, vtk_dataset_type=vtk_dataset_type) else: shape_mgr.setReader(file_format=format) icqsol_path = icqsol_utils.get_input_file_path(tmp_dir, dataset_path, format) shape_tuple = (expression_var, shape_mgr.loadAsShape(icqsol_path)) shape_tuples.append(shape_tuple) # Define the output file format and type. output_format, output_file_type = icqsol_utils.get_format_and_type(args.output_vtk_type) tmp_output_path = icqsol_utils.get_temporary_file_path(tmp_dir, output_format) shape_mgr.setWriter(file_format=output_format, vtk_dataset_type=icqsol_utils.POLYDATA) # Compose the shapes. composite_shape = shape_mgr.composeShapes(shape_tuples, args.expression) # Save the output. shape_mgr.saveShape(shape=composite_shape, file_name=tmp_output_path, file_type=output_file_type) shutil.move(tmp_output_path, args.output)