comparison idr_download_by_ids.xml @ 2:17b1cd0f4812 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idr_download commit 7d7d50f41a9da71b0f45f8b710e52696689a8d85"

1:9340cbc7796c

<?xml version="1.0"?>
<tool id="idr_download_by_ids" name="IDR Download" version="0.10" profile="18.09">
    <description>- download images from the Image Data Resource using image IDs</description>
    <macros>
        <xml name="region_spec" token_pos="upper-left corner">
            <param name="x_coord" type="integer" value="0" min="0"
            label="x-coordinate of region @POS@" />

            help="Set to zero to extend the rectangle maximally along the y-axis of the image" />
        </xml>
    </macros>
    <requirements>
        <requirement type="package" version="5.6.0">python-omero</requirement>
        <requirement type="package" version="3.1.3">matplotlib</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        mkdir downloads && cd downloads &&
        #if str($image_ids.source) == 'link':
            python -c 'print("${image_ids.id_spec}".replace(",", "|").split("?show=")[-1].replace("|", "\n"))'

            </conditional>
            <param name="frame" value="20" />
            <output_collection name="output_file" type="list" count="3">
                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D__9036711__0__0__1024__1024">
                    <assert_contents>
                        <has_size value="4194510" />
                    </assert_contents>
                </element>
            </output_collection>
            <output name="out_log">
                <assert_contents>

            <param name="frame" value="20" />
            <param name="skip_failed" value="true" />
            <output_collection name="output_file" type="list" count="2">
                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D__9036711__0__0__1024__1024">
                    <assert_contents>
                        <has_size value="4194510" />
                    </assert_contents>
                </element>
            </output_collection>
            <output name="out_log">
                <assert_contents>

2:17b1cd0f4812

<?xml version="1.0"?>
<tool id="idr_download_by_ids" name="IDR Download" version="0.20" profile="18.09">
    <description>- download images from the Image Data Resource using image IDs</description>
    <macros>
        <xml name="region_spec" token_pos="upper-left corner">
            <param name="x_coord" type="integer" value="0" min="0"
            label="x-coordinate of region @POS@" />

            help="Set to zero to extend the rectangle maximally along the y-axis of the image" />
        </xml>
    </macros>
    <requirements>
        <requirement type="package" version="5.6.0">python-omero</requirement>
        <requirement type="package" version="0.4.2">pylibtiff</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        mkdir downloads && cd downloads &&
        #if str($image_ids.source) == 'link':
            python -c 'print("${image_ids.id_spec}".replace(",", "|").split("?show=")[-1].replace("|", "\n"))'

            </conditional>
            <param name="frame" value="20" />
            <output_collection name="output_file" type="list" count="3">
                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D__9036711__0__0__1024__1024">
                    <assert_contents>
                        <has_size value="2097286" />
                    </assert_contents>
                </element>
            </output_collection>
            <output name="out_log">
                <assert_contents>

            <param name="frame" value="20" />
            <param name="skip_failed" value="true" />
            <output_collection name="output_file" type="list" count="2">
                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D__9036711__0__0__1024__1024">
                    <assert_contents>
                        <has_size value="2097286" />
                    </assert_contents>
                </element>
            </output_collection>
            <output name="out_log">
                <assert_contents>