Mercurial > repos > iuc > iedb_api

diff iedb_api.xml @ 3:e95d3221b7f0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/iedb_api commit 863578373c7dadc5880633115b0c348f73dac782"
author iuc
date Fri, 11 Sep 2020 21:02:34 +0000
parents a09849898387
children 7ed6dda64a81
line wrap: on
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--- a/iedb_api.xml	Wed Jul 29 17:29:56 2020 -0400
+++ b/iedb_api.xml	Fri Sep 11 21:02:34 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="iedb_api" name="IEDB" version="2.15.0">
+<tool id="iedb_api" name="IEDB" version="2.15.1">
     <description>MHC Binding prediction</description>
     <macros>
         <xml name="alleles" token_hla_regex="" token_hla_examples="" token_hlalen_examples=""> 
@@ -43,6 +43,7 @@
             #else:
               -A '$entered_alleles'
             #end if
+            -l '$prediction.lengths'
         #end if
 
         #if $sequence.seqsrc == 'fasta':
@@ -95,6 +96,8 @@
                     <option value="recommended" selected="true">recommended</option>
                     <option value="consensus">consensus</option>
                     <option value="netmhcpan">netmhcpan</option>
+                    <option value="netmhcpan_ba">netmhcpan_ba</option>
+                    <option value="netmhcpan_el">netmhcpan_el</option>
                     <option value="ann">ann</option>
                     <option value="smmpmbec">smmpmbec</option>
                     <option value="smm">smm</option>
@@ -261,7 +264,7 @@
                 <param name="method" value="recommended"/>
                 <conditional name="alleles">
                     <param name="allelesrc" value="history"/>
-                    <param name="allele_file" ftype="tabular" value="alleles.tsv"/>
+                    <param name="allele_file" ftype="tabular" value="alleles_len.tsv"/>
                 </conditional>
             </conditional>
             <conditional name="sequence">
@@ -284,6 +287,7 @@
                     <param name="allelesrc" value="history"/>
                     <param name="allele_file" ftype="tabular" value="alleles.tsv"/>
                 </conditional>
+                <param name="lengths" value="8,9"/>
             </conditional>
             <conditional name="sequence">
                 <param name="seqsrc" value="tabular"/>