Mercurial > repos > iuc > integron_finder

changeset 4:5429646e486d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/integron_finder commit 13f722da1a2d95586490e8534b9884abe61ba7cd
author iuc
date Tue, 10 Feb 2026 15:53:58 +0000
parents bfd290fe1588
children
files integron_finder.xml macro.xml
diffstat 2 files changed, 9 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/integron_finder.xml	Fri Jun 14 21:19:29 2024 +0000
+++ b/integron_finder.xml	Tue Feb 10 15:53:58 2026 +0000
@@ -65,16 +65,16 @@
         <param name="no_logfile" type="boolean" truevalue="true" falsevalue="false" label="Remove log file"/>
     </inputs>
     <outputs>
-        <collection type="list" label="Genbank files from [$tool.name] on $[on_string]" name="genbank_out">
-            <discover_datasets pattern="(?P&lt;designation&gt;.+)\.gbk" format="gbk" visible="false" directory="Results_Integron_Finder/" />
+        <collection type="list" label="${tool.name} on ${on_string}: Genbank " name="genbank_out">
+            <discover_datasets pattern="(?P&lt;designation&gt;.+)\.gbk" format="genbank" visible="false" directory="Results_Integron_Finder/" />
             <filter>gbk</filter>
         </collection>
-	      <data format="txt" name="integron_log" from_work_dir="Results_Integron_Finder/integron_finder.out" label="Log from [$tool.name] on $[on_string]">
+	    <data format="txt" name="integron_log" from_work_dir="Results_Integron_Finder/integron_finder.out" label="${tool.name} on ${on_string}: Log">
             <filter> no_logfile == False</filter>
         </data>
-        <data format="tsv" name="integrons_table" from_work_dir="Results_Integron_Finder/*.integrons" label="Integrons annotations from [$tool.name] on $[on_string]"/>
-        <data format="tsv" name="summary" from_work_dir="Results_Integron_Finder/*.summary" label="Summary from [$tool.name] on $[on_string]"/>
-        <collection type="list" label="Graphic from [$tool.name] on $[on_string]" name="pdf_out">
+        <data format="tsv" name="integrons_table" from_work_dir="Results_Integron_Finder/*.integrons" label="${tool.name} on ${on_string}: Integron annotations"/>
+        <data format="tsv" name="summary" from_work_dir="Results_Integron_Finder/*.summary" label="${tool.name} on ${on_string}: Summary"/>
+        <collection name="pdf_out" type="list" label="${tool.name} on ${on_string}: Graphic">
             <discover_datasets pattern="(?P&lt;designation&gt;.+)\.pdf" format="pdf" visible="false" directory="Results_Integron_Finder/" />
             <filter>pdf</filter>
         </collection>
@@ -146,7 +146,7 @@
                     <param name="calin_threshold" value="3"/>
                     <param name="max_attc_size" value="188"/>
                     <param name="min_attc_size" value="30"/>
-                    <param name="keep_palindromes" value=""/>
+                    <param name="keep_palindromes" value="false"/>
                 </section>
             </section>
             <output name="integrons_table" value="test7_integrons_table.tsv" lines_diff="3" />
--- a/macro.xml	Fri Jun 14 21:19:29 2024 +0000
+++ b/macro.xml	Tue Feb 10 15:53:58 2026 +0000
@@ -1,7 +1,7 @@
 <macros>
     <token name="@TOOL_VERSION@">2.0.5</token>
-    <token name="@VERSION_SUFFIX@">0</token>
-    <token name="@PROFILE@">22.05</token>
+    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@PROFILE@">24.2</token>
     <token name="@THREADS@">\${GALAXY_SLOTS:-2}</token>
     <xml name="requirements">
         <requirements>