Mercurial > repos > iuc > interval2maf
changeset 2:1080e07a2233 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 9f522562ca2048b8bafa3404abf3f930f72f7f05
| author | iuc |
|---|---|
| date | Wed, 09 Nov 2022 12:34:55 +0000 |
| parents | b79f6002b176 |
| children | 7adddc6015c1 |
| files | interval2maf.py interval2maf.xml macros.xml test-data/interval2maf-in.bed test-data/interval2maf-out1.maf test-data/interval2maf-out2.maf test-data/interval2maf-out3.maf |
| diffstat | 7 files changed, 9025 insertions(+), 23177 deletions(-) [+] |
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--- a/interval2maf.py Tue Nov 10 18:48:33 2020 +0000 +++ b/interval2maf.py Wed Nov 09 12:34:55 2022 +0000 @@ -31,7 +31,7 @@ import bx.align.maf import bx.intervals.io from bx.cookbook import doc_optparse -from galaxy.tools.util import maf_utilities +from galaxy.datatypes.util import maf_utilities def __main__():
--- a/interval2maf.xml Tue Nov 10 18:48:33 2020 +0000 +++ b/interval2maf.xml Wed Nov 09 12:34:55 2022 +0000 @@ -1,11 +1,12 @@ -<tool id="Interval2Maf1" name="Extract MAF blocks" version="1.0.1+galaxy0"> +<tool id="Interval2Maf1" name="Extract MAF blocks" version="1.0.1+galaxy1" profile="21.05"> <description>given a set of genomic intervals</description> <macros> <import>macros.xml</import> </macros> - <requirements> - <expand macro="requirements" /> - </requirements> + <xrefs> + <xref type="bio.tools">bx-python</xref> + </xrefs> + <expand macro="requirements" /> <command> <