Mercurial > repos > iuc > iqtree
comparison iqtree.xml @ 17:0878b7fd5260 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/iqtree/ commit fce566406340cd87aeae2cfaac40e53dfd0db5ff
| author | iuc |
|---|---|
| date | Tue, 20 Aug 2024 08:50:50 +0000 |
| parents | 70acec670c30 |
| children | f87ac61981f0 |
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| 16:111bd54f6bc4 | 17:0878b7fd5260 |
|---|---|
| 358 $bootstrap_parameters.nonparametric_bootstrap.bcon | 358 $bootstrap_parameters.nonparametric_bootstrap.bcon |
| 359 $bootstrap_parameters.nonparametric_bootstrap.bonly | 359 $bootstrap_parameters.nonparametric_bootstrap.bonly |
| 360 $bootstrap_parameters.nonparametric_bootstrap.tbe | 360 $bootstrap_parameters.nonparametric_bootstrap.tbe |
| 361 | 361 |
| 362 #if str($miscellaneous_options.fconst) != '' | 362 #if str($miscellaneous_options.fconst) != '' |
| 363 --fconst '$miscellaneous_options.fconst' | 363 -fconst '$miscellaneous_options.fconst' |
| 364 #end if | 364 #end if |
| 365 ]]> | 365 ]]> |
| 366 </command> | 366 </command> |
| 367 <inputs> | 367 <inputs> |
| 368 <section name="general_options" expanded="true" title="General options"> | 368 <section name="general_options" expanded="true" title="General options"> |
| 369 <param argument="-s" type="data" format="txt,fasta,phylip,nex,clustal,msf" optional="true" label="Specify input alignment file in PHYLIP, FASTA, NEXUS, CLUSTAL or MSF format."/> | 369 <param argument="-s" type="data" format="txt,fasta,phylip,nex,clustal,msf" optional="true" label="Specify input alignment file in PHYLIP, FASTA, NEXUS, CLUSTAL or MSF format."/> |
| 370 <param argument="-o" type="text" optional="true" label="Comma-separated list of taxons to output"> | 370 <param argument="-o" type="text" optional="true" label="Specify an outgroup taxon name to root the tree" help="If an outgroup taxon name is not specified, the first taxon in the alignment will be used to root the tree"> |
| 371 <expand macro="sanitize_query" /> | 371 <expand macro="sanitize_query" /> |
| 372 </param> | 372 </param> |
| 373 | 373 |
| 374 <param type="boolean" name="short_alignments" label="Short alignments" help="IQ-TREE will fail if given too many threads on input data that consists of short alignments, this option will force the use of a single thread." /> | 374 <param type="boolean" name="short_alignments" label="Short alignments" help="IQ-TREE will fail if given too many threads on input data that consists of short alignments, this option will force the use of a single thread." /> |
| 375 <param argument="--seqtype" type="select" label="Specify sequence type as either of DNA, AA, BIN, MORPH, CODON or NT2AA for DNA, amino-acid, binary, morphological, codon or DNA-to-AA-translated sequences"> | 375 <param argument="--seqtype" type="select" label="Specify sequence type as either of DNA, AA, BIN, MORPH, CODON or NT2AA for DNA, amino-acid, binary, morphological, codon or DNA-to-AA-translated sequences"> |