diff iqtree.xml @ 9:f58a10e2e46d draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/iqtree/ commit 00ddca12cd441fab5c928f93c62fa8aa79160967"

--- a/iqtree.xml	Wed Aug 18 20:41:40 2021 +0000
+++ b/iqtree.xml	Fri Aug 20 20:17:09 2021 +0000
@@ -1,7 +1,7 @@
 <tool id="iqtree" name="IQ-TREE" version="@TOOL_VERSION@+@VERSION_SUFFIX@" >
     <description>Phylogenomic / evolutionary tree construction from multiple sequences</description>
     <macros>
-        <token name="@VERSION_SUFFIX@">galaxy0</token>
+        <token name="@VERSION_SUFFIX@">galaxy1</token>
         <import>iqtree_macros.xml</import>
     </macros>
     <expand macro="requirements" />
@@ -696,6 +696,9 @@
         <data name="timetree" format="nex" from_work_dir="PREF.timetree.nex" label="${tool.name} on ${on_string}: Tree labeled with dates">
             <filter>time_tree['date_source']['select_source'] != 'none'</filter>
         </data>
+        <data name="lsd_report" format="txt" from_work_dir="PREF.timetree.lsd" label="${tool.name} on ${on_string}: LSD Report">
+            <filter>time_tree['date_source']['select_source'] != 'none'</filter>
+        </data>
     </outputs>
     <tests>
         <test expect_num_outputs="6">
@@ -848,7 +851,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test expect_num_outputs="7">
+        <test expect_num_outputs="8">
             <param name="s" value="dates.fa" />
             <param name="n" value="100" />
             <param name="seed" value="122125" />
@@ -859,6 +862,11 @@
                     <has_line_matching expression=".+222-3pu_03-28-01_985737600.+" />
                 </assert_contents>
             </output>
+            <output name="lsd_report">
+                <assert_contents>
+                    <has_line_matching expression="^LEAST-SQUARE METHODS.+" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[