# HG changeset patch
# User iuc
# Date 1629319300 0
# Node ID c1d53e95327fadbf2f4f73742a59670d11740ff1
# Parent  524d31add34a7f574ecc35ca0162195567c2c230
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/iqtree/ commit a58c8d3c985688e49908dfeceab5be4352d71563"

diff -r 524d31add34a -r c1d53e95327f iqtree.xml
--- a/iqtree.xml	Fri Aug 13 21:35:49 2021 +0000
+++ b/iqtree.xml	Wed Aug 18 20:41:40 2021 +0000
@@ -76,7 +76,7 @@
 ## date options
 #if str($time_tree.date_source.select_source) == 'dataset':
     #if $time_tree.date_source.date:
-        --date $time_tree.date_source.date
+        --date '$time_tree.date_source.date'
     #end if
 #elif str($time_tree.date_source.select_source) == 'input':
     --date TAXNAME
@@ -366,7 +366,7 @@
     </command>
     <inputs>
         <section name="general_options" expanded="true" title="General options">
-            <param argument="-s" type="data" format="txt" optional="true" label="Specify input alignment file in PHYLIP, FASTA, NEXUS, CLUSTAL or MSF format."/>
+            <param argument="-s" type="data" format="txt,fasta,phylip,nex,clustal,msf" optional="true" label="Specify input alignment file in PHYLIP, FASTA, NEXUS, CLUSTAL or MSF format."/>
             <param argument="-o" type="text" optional="true" label="Comma-separated list of taxons to output">
                 <expand macro="sanitize_query" />
             </param>
@@ -400,7 +400,7 @@
                 <when value="none" />
                 <when value="input" />
                 <when value="dataset">
-                    <param argument="--date" type="data" format="text" optional="true" label="File containing dates of tips or ancestral nodes" />
+                    <param argument="--date" type="data" format="txt,tabular" optional="true" label="File containing dates of tips or ancestral nodes" />
                 </when>
             </conditional>
             <param argument="--date-tip" type="text" optional="true" label="Tip dates as a real number or YYYY-MM-DD">