Mercurial > repos > iuc > iqtree
changeset 3:973a28be3b7f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/iqtree/ commit 73ef23e40772952e5fde0576d66fa81de4916058"
| author | iuc |
|---|---|
| date | Wed, 29 Jan 2020 16:34:20 -0500 |
| parents | d1c340a5664b |
| children | f97743d52b87 |
| files | iqtree.xml |
| diffstat | 1 files changed, 18 insertions(+), 4 deletions(-) [+] |
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--- a/iqtree.xml Wed Oct 17 11:43:10 2018 -0400 +++ b/iqtree.xml Wed Jan 29 16:34:20 2020 -0500 @@ -1,4 +1,4 @@ -<tool id="iqtree" name="IQ-TREE" version="@TOOL_VERSION@.1" > +<tool id="iqtree" name="IQ-TREE" version="@TOOL_VERSION@.3" > <description>Phylogenomic / evolutionary tree construction from multiple sequences</description> <macros> <import>iqtree_macros.xml</import> @@ -303,9 +303,8 @@ <param name="opt_custommodel" type="boolean" checked="false" label="Use Custom Model" help="See http://www.iqtree.org/doc/Substitution-Models"/> <when value="true"> <param argument="-m" type="text" label="Model"> - <sanitizer> - <valid initial="string.ascii_uppercase,+" /> - </sanitizer> + <expand macro="sanitize_query" + validinitial="string.ascii_uppercase,string.digits,string.punctuation" /> </param> </when> <when value="false"> @@ -632,6 +631,21 @@ </assert_contents> </output> </test> + <test> + <param name='s' value='example.phy' /> + <param name='opt_custommodel' value='true' /> + <param name='m' value='GTR+G{0.9}' /> + <output name='iqtree'> + <assert_contents> + <has_text_matching expression=".*Human.*Whale.*" /> + </assert_contents> + </output> + <output name='treefile'> + <assert_contents> + <has_text_matching expression="\(LngfishAu:(\d|\..)+,\(LngfishSA:(\d.)+,.*" /> + </assert_contents> + </output> + </test> </tests> <help><![CDATA[ IQ-TREE