Mercurial > repos > iuc > iqtree
changeset 19:6bbd30d58cf4 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/iqtree/ commit bfeaaf8691c2f88d4f6d888b4e739207afde1970
| author | iuc |
|---|---|
| date | Thu, 20 Feb 2025 20:11:40 +0000 |
| parents | f87ac61981f0 |
| children | |
| files | iqtree.xml iqtree_macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 10 deletions(-) [+] |
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--- a/iqtree.xml Tue Oct 15 18:14:01 2024 +0000 +++ b/iqtree.xml Thu Feb 20 20:11:40 2025 +0000 @@ -888,10 +888,6 @@ IQ-TREE ======= -The full documentation can be found here_. - -.. _here : http://www.iqtree.org/doc/ - General Tutorial =================== @@ -941,11 +937,9 @@ Running example --------------------- -From the download_ there is an example alignment called `example.phy` +From the downloads there is an example alignment called `example.phy` in PHYLIP format. This example contains parts of the mitochondrial DNA sequences of several animals. -.. _download: http://www.iqtree.org/#download - You can now start to reconstruct a maximum-likelihood tree from this alignment by entering (assuming that you are now in the same folder with `example.phy`): @@ -1024,9 +1018,8 @@ Choosing the right substitution model ------------------------------------- -IQ-TREE will choose the best model for you automatically if specify any of the TEST models, but valid custom models can also be specified that conform to those found in Models_ page. +IQ-TREE will choose the best model for you automatically if specify any of the TEST models, but valid custom models can also be specified that conform to those found in Models page. -.. _Models: http://www.iqtree.org/doc/Substitution-Models#binary-and-morphological-models ------------------------------
--- a/iqtree_macros.xml Tue Oct 15 18:14:01 2024 +0000 +++ b/iqtree_macros.xml Thu Feb 20 20:11:40 2025 +0000 @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">2.3.6</token> + <token name="@TOOL_VERSION@">2.4.0</token> <token name="@VERSION_SUFFIX@">0</token> <xml name="requirements"> <requirements>