# HG changeset patch
# User iuc
# Date 1662024596 0
# Node ID debe9c750cddb6dd4aa36fcaa23c50ead9210fb7

planemo upload for repository https://github.com/pimarin/tools-iuc/tree/isescan commit d9d88c043b2d45877e3b0bffba6e709c9a0f0379

diff -r 000000000000 -r debe9c750cdd isescan.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/isescan.xml	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,87 @@
+<tool id="isescan" name="ISEScan" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description> Insertion Sequence Elements detection in prokaryotic genomes </description>
+    <macros>
+        <import>macro.xml</import>
+    </macros>
+    <expand macro='xrefs'/>
+    <expand macro="requirements" />
+    <expand macro="version_command" />
+    <command detect_errors="exit_code"><![CDATA[
+        ln -s '$input_file' input &&
+        isescan.py
+        --seqfile input
+        --output 'results'
+        $remove_short_is
+        --nthread \${GALAXY_SLOTS:-7}
+        #if '$log_activate'
+            | tee '$logfile'
+        #end if
+    ]]>
+    </command>
+    <inputs>
+        <param name="input_file" type="data" format="fasta" label="Genome fasta input" help="Fasta sequence to analyse for IS"/>
+        <param name="remove_short_is" argument="--removeShortIS" type="boolean" truevalue="--removeShortIS" falsevalue=""
+               label="Remove incomplete IS elements"
+               help="Remove partial IS elements which include IS element with length &gt; 400 or single copy IS element without perfect TIR"/>
+        <param name="log_activate" type="boolean" truevalue="true" falsevalue="false" checked="True" label="Keep the log file"/>
+    </inputs>
+    <outputs>
+        <data format="txt" name="logfile" from_work_dir="results">
+            <filter> log_activate == True </filter>
+        </data>
+        <data format="tabular" name="summary" from_work_dir="results/input.sum"/>
+        <data format="tabular" name="all_results" from_work_dir="results/input.tsv"/>
+        <data format="gff" name="annotation" from_work_dir="results/input.gff"/>
+        <data format="fasta" name="is_fasta" from_work_dir="results/input.is.fna"/>
+        <data format="fasta" name="orf_fna" from_work_dir="results/input.orf.fna"/>
+        <data format="fasta" name="orf_faa" from_work_dir="results/input.orf.faa"/>
+    </outputs>
+    <tests>
+        <test expect_num_outputs="7"> <!-- TEST_1 default parameters -->
+            <param name="input_file" value="NC_012624.fna"/>
+            <output name="logfile" value="TEST_1/test_1.log" lines_diff="70"/>
+            <output name="summary" value="TEST_1/test_1.fna.sum" lines_diff="2"/>
+            <output name="all_results" value="TEST_1/test_1.fna.tsv" lines_diff="1"/>
+            <output name="annotation" value="TEST_1/test_1.fna.gff" lines_diff="1"/>
+            <output name="is_fasta" value="TEST_1/test_1.fna.is.fna" lines_diff="1"/>
+            <output name="orf_fna" value="TEST_1/test_1.fna.orf.fna" lines_diff="1"/>
+            <output name="orf_faa" value="TEST_1/test_1.fna.orf.faa" lines_diff="1"/>
+        </test>
+        <test expect_num_outputs="7"> <!-- TEST_1 remove short is -->
+            <param name="input_file" value="NC_012624.fna"/>
+            <param name="remove_short_is" value="true"/>
+            <output name="logfile" value="test_2.log" lines_diff="50"/>
+            <output name="summary" value="test_2.fna.sum" lines_diff="1"/>
+            <output name="all_results" value="test_2.fna.tsv" lines_diff="1"/>
+            <output name="annotation" value="test_2.fna.gff" lines_diff="1"/>
+            <output name="is_fasta" value="test_2.fna.is.fna" lines_diff="1"/>
+            <output name="orf_fna" value="test_2.fna.orf.fna" lines_diff="1"/>
+            <output name="orf_faa" value="test_2.fna.orf.faa" lines_diff="1"/>
+        </test>
+        <test expect_num_outputs="6"> <!-- TEST_1 remove short is and no logfile -->
+            <param name="input_file" value="NC_012624.fna"/>
+            <param name="remove_short_is" value="true"/>
+            <param name="log_activate" value="False"/>
+            <output name="summary" value="test_2.fna.sum" lines_diff="1"/>
+            <output name="all_results" value="test_2.fna.tsv" lines_diff="1"/>
+            <output name="annotation" value="test_2.fna.gff" lines_diff="1"/>
+            <output name="is_fasta" value="test_2.fna.is.fna" lines_diff="1"/>
+            <output name="orf_fna" value="test_2.fna.orf.fna" lines_diff="1"/>
+            <output name="orf_faa" value="test_2.fna.orf.faa" lines_diff="1"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+      **What it does**
+      ISEScan is a python pipeline to identify Insertion Sequence elements (both complete and incomplete IS elements) in genome.
+      If you want isescan to report only complete IS elements, you need to set command removeShortIS.
+
+      **Input data**
+      ISEScan accept fasta file format as input
+
+      **Parameters**
+      You can remove the short partial IS elements which include IS element with length < 400 or single copy IS element without perfect TIR/>
+
+        ]]>
+    </help>
+    <expand macro="citations"/>
+</tool>
diff -r 000000000000 -r debe9c750cdd macro.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macro.xml	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,23 @@
+<macros>
+    <token name="@TOOL_VERSION@">1.7.2.3</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">21.05</token>
+    <xml name="version_command">
+        <version_command><![CDATA[isescan.py --version]]> </version_command>
+    </xml>
+    <xml name="xrefs">
+        <xrefs>
+            <xref type='bio.tools'>ISEScan</xref>
+        </xrefs>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">isescan</requirement>
+        </requirements>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1093/bioinformatics/btx433</citation>
+        </citations>
+    </xml>
+</macros>
diff -r 000000000000 -r debe9c750cdd test-data/NC_012624.fna
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/NC_012624.fna	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,605 @@
+>gi|228288719|ref|NC_012624.1| Sulfolobus islandicus Y.N.15.51 plasmid pYN01, complete sequence
+TTTTTAAAAACCCTGCATAGTGATGATCTCCAAAAAAGAGTTTTTACCTATTCTTGCATACTCTATTCCA
+ACATATGTACTAGTGTATCCATCATTTTTTGTTAACACTCTAGCAAGGGAATTCCCATACTGGGAGGCAT
+TCCTACTACTCTCCCTACCCTTTCTAGGGAGAGTAGTAGGATCCCTAATTTACCAATTCTTCAAATCCTA
+CATCATACCGCTCCTAACCCTTAGCATACTCACGCTCCTACAAATCGATTTAAACATAATATTTCCCGTC
+AGATTCTTGATCGGCATAATCTTCGGACTAATGACCAGCTACGCAGTTGACAATGCTGTTAAAACGAACA
+ACTTAGTGTTAGGTTTAACCACAGCGGGCTGGAGTATAGGATGGATACTATCATATATAGCATATACAAC
+AATCCATAATTGGAATCAAATATGCATAATCAGCAGCATAATAATAGTATCCATAGCACTCCTAGACAGA
+AGAGTAAGCCTAGATAAAATCAAAATCAATATAAGCTTACCAAAAACGTCATCCATAATAGTCTACTTCT
+CAGCGTTAACCCCGGCATTCACACTACAAATAATTCCGAGCATATTCGAAAAAGCACACACAACATGGCT
+AATACTCCCTTCGTATCTACTTTCCATAGCTGCGTATACTATACTACCAATAATAGCAAGCAAAATAGGA
+CTAAAGAGATGCATCATAATAACAACCCTAGGAATACTAATTAGTGGAATAACAACATTCCTAATAACAC
+CCTACACCCTATTACCATATACCTCACTAGGACTAGGAATACTTTCACTAATACCGAAATACTTAACAAC
+GAAAAACGAAAAAGCCAACACTCTGGGAATAGCCCTAAATATAGGATCAATAGGAGGACTAATAATACCA
+ACGCTATACACAATAATACCGACAAGCCCAGAATCAATACTCATAATAACTTCAATAATATTGTTAACAA
+TCTAAAAAATTGTAATGAGGGTTTTTAAAAACCCCAAAAGTGAAGGTGGTGAAATGATTTCGCCTGACTT
+AGCAATAAAAATTCTTCTATTAGTTCCTTCAGTAATATTCTTCTTCTACAGTGCAGTATATTTAATGTTA
+TTTGAGCTAAATGTACAACCTAAACTGAGCAAATTCTACAGAAATACTAGTCTAGTTTTAGCTGGAGGTG
+GTATACTATTATTGACAATTTATTTAATGATTTAGATAGCATAGATGATATAATTTTAATAATATTGGCA
+AATGCTAACGGAACTGTTAAAGAAATGGCAGAGAAAACGGGAATAAAAGAAGAAGCTGTATATCATCTTT
+TAGAATTTCTAACAATAGCTGGGATTGTGAAGAAAGAGAATGATAGATATTCTATAGATAAAACAATGAG
+AACTATAGCTCAACTTTTGATAGATTTTAAAGACGGAGATGACGTGAATTGAAGAAAATAGTAATAAAAA
+CAGAACTTCCTTATAATTATAGAAAGCTTAAGGGATTTTTCATTTCACCTGGGGTGCTCAGATTATTTTA
+TGACGTAAAGAGTGTAGAAGTTGCAGGGAATTTATCATATATTATTAACAACAAGTACAATGCAATAATG
+TATTTCAGTAATGTTGATATTGTATGGGAGATTTATAATGGTAGATTAAAGGATAAGATCTCAGTATGGT
+TATATCCAATTGGTGATAATACAGGATTACACTTGAAATTCGAAACTAATAGAATACTCCCGCTAAAGAA
+ACCTCTAGAAAATGAAGTCAAAGCAGGAGTAGAATTGCTAAAAAGTTTGTTAGATGCTTTGAGGAGGTTC
+TGATGAAGTTAAGAACCCATTACATCTTCTCAACCGGTTTATTGACGCTTCTGGACTCTGTACTCTTTCA
+TGAATATTTTTACTACGCTTTAATCTTGAGCGGAATAGTTTCGGTAATAGGTAATTCCTTGATTGATAGG
+ATTGGCCATAAGGAGATTGCCACTAGGTATGGGTATATCCCGGTAAGGACACCTTTAACCCATACAATTC
+CTAGAAGTGTAGTTTGGGGTATTGTCTCCGTAGTCCCGGTCTTTATTCTCTTATTGATTTATTATTATGG
+GTTTAGCTATCACGAGTACTATTTCTCCCTTAGCAATAAGGTGGTGTTGTTAATATTGTTAAATGGTGTA
+GTTGTTGGGCCCTCTCATTTGTTCCTGGACGTATTTACGGAAAGGGGAATATATCATAAAGTAAATGGTA
+AGTGGAGGAGATTCGCATTGGCACACTTCTCCTATGATAACCCCTTAGTAAATGGATTAGCAATCTTACT
+AGGAATTATAATGCTGCTAGCAGCACTTTATCTACATAACTACCATTATTACAACTATTATTTCTAACGA
+GATAATAATAGTATAAAGATAAAAACAAAAAAGTTTTTAAATCTGTTTTTACAGAAGTAGAAATGGGGGA
+TGAGGGGATGATGAGTAGGGTCAGAATTGACCTATGATAGGACACTCGGCAGCTGACCTGACCCCCTCAT
+CCCTAATTTATTCTTACCTTATCTAACTATTAAGCTTTTCTTCTCATTGAATTTTGAAAAATTGAGCAAA
+GAATGAGGTTGGATCCTAACGTTAAATTTACGACGTGAGAAAAATTCAATAAACTCCCCAGTTTGCTAAG
+AAAAATTCTTTCTTCTAATTTCTTAATCTCATCTAATTTTGTATTATTAGCTAATAATGTACAATAAATG
+CAGCTGAGGAGTGATATGATGCAACATAGATACGCTAAACATTCTCTATAATAAACTGAAATATGATAAT
+GTATTCGAATTGAATTAAGCATCTTTATAATTAGGCAAATTTGTATAACACAAATATAAGTGTGCGTAAT
+TATTGCAGAAATAGTTATCAAGACACTTGTTAAAATAAAAGAAATGATGAGAAGAGTTTTATTTCTCATA
+ATATTATAAATTTTATTTAAAAAGCTCAGTTGAATTAACTCCAGTTTACTCTACAAAAATTCAAAGTAGT
+TAATCCTGCACGGATCTCAAATTTTTTAGTTAAAAGAGCAAGGTAATGCGATAATGACCATAAATACTAC
+ACTTTGTTAACCCTACTATTCCCAGTTTGGGAACTCATTTTCAGCCCCCTTCTAAGGAGGTAACACTTTG
+TTAACCCTAGTTAAGGTTTATTAAGGGAAATTTCTCAATACAATTTTATGGAAGTTAAGATAGAGAAACA
+TAAGTCAAGGTTTACCATTACACAATTAATTTTAATGGCTATGGCTAAAGCTCCTGGGAGCTGCTGTAGT
+TTGGAATATTTACATGAGAAAACTGGTGTTGATAAGAAGGAGCTGCTAGTATATCTAACAAGGTTAGCCA
+AAAGAGGAATAATAGAAAGGAAATGGCATAAAAGTAGGGCAGGGAAAGAGAGAATGTATTGTCTGAAGTA
+TAAGGAGGATATACTATGAGCCCGCCAAATGATAAATTTTTAGAATACGCTAAAGCGCTTTTAGAAACTG
+CAGAATCTGATTTAGATGCAAGTAAATTTCTTTGGGATTGTAATTATCAAGCTCAGTCAGTGTTTTATCT
+TCAGCAATCAACCGAGAAGATATTTAAAGCGTTTAGGAGCATGTATCAGTACCTCTTTGTAGAATTTCCC
+GAATTTATTACAGAGGAACTGATAGCTTCAAGTAATAGTAGAGTTACTAACTTGATGCCCTATCTTACAC
+TGTTAAATTTAAGGTTAAAAGAGAGAAAACTGAATATTAAAGGCCTGGAAGATTTACTGAAAAAGGAATA
+CTCTCATGGCTTAAAGAAAGGATTAAAGGGCGAAATAGATGAGTTAAAAAAGGAACTTGAATATGATAAA
+GTTATTTTAAAGGGTATATTTTCTCAACTACAGTATACTAATATAACAAATAATATTGATTCTGCAATAT
+ACTCGCTTATAAATAATTTATTATCACCTCAAGGTAACCAACAGAATATCGAGAAAGAATTAAAAGATAT
+AGAGGGAATCATTGAGAGTATTAATAATGTAACTTCGTTCCTTCAAAAATTCGTGGGAGAAATTAAAAAA
+CAACCATCAAGTATACCCTTACAAAGTTCATCCAGGAATAGTAGTAATTTAGTAGATATTATTTTAGACG
+AAGTTTTACCTTCTATACTTACCGTTTTAATATTACCATTTAAACTATATAATATAGCGTCTTATCTTGC
+TCAGTTTGAAGAGAATTCAAGATATCCGCAAATAAATAACGGAAACATTGAAATTCCACAAGATATAATT
+CGCAATTGGTCTAATAATTATTCTAGTATTTACGGTAATTTATATGAGGTAATAAAAGAGATTCTAAATA
+ACTTTAAGAAAACTGACCAATTTCTGCTAGATATTCATTATAGAGTTATTCAGAGAAACTATTCTATGGA
+TAGTATACTTAATGATATTCTTGGTTTCATAGACTTTATAAACAATATTTTTCCAATATTACTACAAAAA
+AATATATTACAGAAAATAATAAATATTATAAATAAAGATAAAATAGATGAAAATGATATTGAACAATTAG
+CAAATGAATTAATCAAAACACTGGAAAAAGTGATCTAAAAGGAAATTAAGCCTAACATAAACTGTGGGAT
+TCGATAGTTTGGAACGTTTTACGTATTCTACTACTATTTTATTCTACTTTTCTTTCATAACATAATTCTA
+CTTCTACTTCAACGTGCAACAGAAAACGTTTCTTTTCAACGTTTTACTGAAACGTTATCTAGCCTGTCGA
+GCCCCTGACCCGGGTTCAAATCCCGGCCGCGGCGTTAATTTTCCCTTAAATTGAAAGAGAGCTACGTTCT
+CTTTATAAAGGCGTAAATGGAACAGTAATCCTTATTTTTGGAACAGCGTCACTTTCTTATAAGTAGGGTA
+GAAATATATGCTAATTGATATTTCTAAACTGGACGAGCAACAAAGGAAGAGAATTATTAAGAAGTTAGTA
+GAGAAGTTGGGGTTATCTCAAGCTGCAAAAATGCTGGATGTCGGTAGGAGTACTTTATATAGATACGTTA
+ACAGTGATCAGAGTATTCCTTTAGACATTGTGAGGAAAGCTGCAGAAATGTTAGCTTCAGACGAACTTTC
+GGACGCAATATACGGGCTGAAAGTAGTTGACGTTGATTTTACTACTGCATTATCTGTAGTTGTTAAAGCT
+ATGAAAGATGAGAAGTTCCGGAACTTTTTCGTTTCGATACTTTATCAATATCTAGGAGACTATTTGAAGA
+ACGTATCATCAACATACATTGTTACTGAAGAAGACGTGAAGAAGTTTGAAAAATTGCTCCAGGGTAAGAG
+TAAAAGCACTATTGTCATGAGGATGAGGTATCTTAGGATAGCGCTTACAAAGTTGGGATATGAGTTAAGC
+CCGGACAGTATCAGAGACTTAATAGCGGAGTTATCTGAAGATAGCAGCAATGTAGCCAGACATACCGCGA
+ATTCCTTGAAACTATTTATCAAAACAGTAGTAAAGGAGAAGAACTTGCAGTTAGCACAGCTGTTATATAA
+TTCGTTCAAAGTTCCTAAGTCTAAGTATAAATACAAACCCCAACCGCTTAGTTTAGAGACGTTAAGAAGA
+ATCTTTGATAATATAGAACACTTAGGTGCTAAAGCTTTCTTCTTATTGCTATCAGAATCAGGGCTCAGGG
+TAGGAGAAGTATACTCGCTTAAGATGGACCAACTAGATCTGGAAAACCGCATAATAAAAGTGATGAAAGA
+ATCAGAAACCAAGAGGGCCTATATTTCCTTTATCCATACAGAAACTAGGAAGTGGTTACAAGAAGTTTAT
+TTCCCATATAGGGAAGAGTTTATAAGGACGTATGAACACGTTGTAGGTCATATAGGAGCTGATGTAGAAG
+CGTGGAAGCAGAAACTGTTCCCTTTTCAGTTAGCGGACTTAAGATCTTCAATAAAAGAAGGGATGAGGAA
+GGTTCTGGGAAAGGAGTTCAGACTTTACGACTTGAGGAGCTTCTTTGCCAGCTATTTAATCAAAAACGGA
+GTATCGCCGATGATAGTTAACATCTTACAAGGACGTGCTCCCCCTGCTCAATTCCAGATACTACAAAACC
+ATTATTTCGTGATGAGCGAGATAGAGCTGAAGAAGATATTTGATGAAAAAGGGCCTAAGCTGCTTTCTCC
+AAAATAAGGTCTATTTCTTTACCTAAATACTGCTCCCAGATCTGTTTCAATGAAATGGGTAGGGTAAGTA
+TAAAGTAGTTTCCGTGCTTATATAGGCTCCTTAGGCCTATTAGTATTTCACGCTGATCAGTTATAGCTGT
+GACGCTCCATTTTCCATGGCTTAAATACTTATCGAAACGCAGAGGTAAATAAACGTAATAAATCTCCTTC
+TTTCCGCTCCTCATTTTTGATACCGTAACTCCAGGTATCAATAACTTACTCACTTCGGCCATTAGATTCA
+CCCCTTAAACTCCCCAGTTTCTTCCTTAATCTTCTGTAAAACTGCCTTCAGATGTAGGTCTTGTTTTTCT
+CTATCTCGTATAGTCAGTGCAATCTCTATAGCCCTCATTAGAATATTATTTTGTCTTCTCAGTTTCATAT
+TTTCATCTTTTAATGAAATGTTCTCTTTCTGCAATCTTTCATTCTCTCTTTCTAACTTTTGCAGCTTCCT
+CTCTAAAGCTGCTATAGTATTCAATGCTTTACTATACTGAATTTGCAGCTCTTCGTTTTCTTCAATGATC
+TCATTTATTGTCATGTCTTATCGCCCAATCGTCCAGGGTAGTTTGTCTCATCTTTTTCTCCTTATTCTTT
+TTAGTCCATTTTTCTGCATAAGGGCAAGAAAGACGATGGGGTCTCCAATCTGGGTCAACTGGAATTTTAT
+AGCCCTTAACATGCCTAACCCAGTAGATTTTCTTATGGCAATATTCGCACTCTGATTCCTCAAATGCCTC
+TACCCAGTCGGGTATGTCTGAAGTCATATTTCCCTCACCCTAACTCCATTGTTTTTCTCTTCAAAGGAAT
+TTAGTCTGTAAACTCTGCCTTTCCTGCAGCTTAAGTAAAACTTTATTGCGGTCCTAATTACCTCGCTTCT
+CTCCTTAGCGTTATTAATGCAGTATAAGTCTAGCTGCTGTAACAATTCCTCCTCTAGTTTAAATGTAACA
+ACCCTCATTCCTTTTCACTCTCGATCTCTTCCCAGTCTACTTCCTCTCCTTCTTCTTGGTTCTTTTTCTG
+CTGATTCTTACTTTGCCTGGTTTTTGCAGCTTTTTCATCTGCCTCTATGTATTGTTTAGCTAAGAGTGCT
+AGAATGTAATCTAATCTCTCTTTAAGTAGAGCAGCTTCAGCTGTTGAGAGATGGAAGAAGGTCTTTTGAT
+TCTCAGAGTGTATAGACAATAATAAACTCCCTTCTTCGGCGAAATCTTTAGAATTTATTTCAACATCATC
+AAATCCTAATTCGAGAACTTTCACTTTCTTATTTTTATCAAAGTGGGCTAACCGTAGGGCTTTTCTCATT
+GAATAACACCTGGAATCAATACTTTTCTTTCGAATTTCCTACAATAGCTTACGTCTTCTTCTAAGTCTTC
+AGTAAAGCTAGGATCATCATTAGCAATAGCATTGAAGAATTTGCAAATAAGCTGCTGACAATCTCCTTCT
+AATTGCTGAATGTTGTCTACTCTTCTGAACTTTAACCAACAATTAATGAATCTGTCAAAATCATTCATTC
+TTCTCACTCTCGACCTCTTCTATGAAGTTCTCAATGGCCTTCTCTGGATAGAATATATGGCCAATACTAG
+GAATCCATAATGTAAGCTCAGTTTTCTCGTTGAAAGAGGCATAGAATGGAATATGTTTTTTGCCTATCCT
+CAGAAATCCCTTTAACGTCTTTCCATCTCTGACCGCCCACACTACCTTAAGTTCCTCTATGTTTACTAAC
+ATAAGATCGTTAGAATTGATAAATTCTTCAAATCTAGCAAATATCTTATCTATAATTTCCTTCTCACTCA
+TTCTTCCTCACCTTTAGACACCAAATATCCAATCCGCTGCCCAGGGGATCTTCAACTTCTTCAACTGCAG
+CTTCTGCTCCTATCTCATCTAACCTTCTAAGAGCCTCTACCTTAGAATAGTAACATTCTTCATATCCCTT
+TTCCTTCATCCAATTAATGAAGTATTTCTCTTCATCTAGATTTTGCGGTAAACTCCCCAGTTTATCGTCA
+GATTTTGATACCATTTGCCTAAAACTTCTCAATAACATAGAATCTCTTTTCTCTTCAATTAATTGTAACT
+GCTTTTCATAATAGCATAATTTTGTTCCAACTTCTGCTTCATCATAGTCTAAGCCGTATAGCTGAAACTC
+TTCCATTGCACTTATCAACTCGTTAATTTCATGTAATATCCTCCTTGCAGCTCTATCTGCAGTTAGTTTC
+TGAGCTTTGCCGAATAACATGTAAGCTTTCTCTAAGTGCTGCTGCAAAGTAGTAGCTTCAGTCATTCTCC
+CACCTCAGCAGCATCTATAGCAAAGCACATTCCATCAGAAGCTTCCTTTTTTGCCTCCTCCTCGCTGTCC
+GCGTACACGTATGCAAAACTTAATTCATCTGGTCCTCCTGCGACAACGTTTAAACATTGCAACCTTACTA
+AGTAGAGCTTTCCAGTCATTCCTCCTCAGCCTCCATTCTTTCAATTATTTGTAGAGCTCTCTTTGCCTTC
+TCCCTGACTCTTTCAATTAGCCATCTTCTTGCTTCTTCATCGGCTTCCACTATCTGTAATATTCTTTCGT
+CACTGGGCGCATAGCCGTTGAGAAACTTATAGTATGCAGTTTTGCTCAGCTTCTTTTCTTCTATCTGCTG
+TTCGAAATCTTCTCTGAATTCCTTTACGAATTCTATCTTATCTTCTCTGTCCAATAAACTAATTAAAAAA
+AGAAGATCTTTCTCCCCATCAACTGGGGAGTTTTTTTGAGCCATTTCAACTAAACTCATTTTCTTCATTC
+TACATAGTATGCAGAGAGATATTTAAACTTTTGCATTCAACATAGAGTGCAGAGAATCTCAAATAAAAAA
+ATGTTATTTACCAATCTCTTTTAGAGTATCGTTTAATTCTAATAATTTTTCAACTACAACCTTGCCAGTC
+TCCGTTAACTTCACTACCTTCTTAGCAGTTCCTACTGAAGTTTTTTCTTCTCTCACCACTATTAACCCAT
+TCTCTTCTAAAATCGGTATCCATTTCTGGATTGTATGCCGTCGTCAACAGTTTCCGATAAACCGTGAAGT
+TTATATACTTTGTATGTAAGTTTAACTACAATGCTGAAACCTAAGGAAGTGTGCCAAAAACTAGGAATAT
+CATACCGCACACTACAGAGCTATGTTAAGAAGGGTTACATAAAACCCGTGATACTACAGAGTGGAAAATG
+GAGGTTTAAAGAAGAGGATGTCGAAAGACTCATGGGGGTTGTTAGGAAGAGGAAAGTAGTATTATACGCT
+AGGGTATCATCAAACACACAGAAAGACGACTTAATAAACCAAGTTAAGTACCTGGAGGAGAACGTTAAGG
+ACTACGACCAAGTAATAACAGACATTGGTTCTGGGTTGAACATGAAGAGAAAAGGATTCCTCAAGCTATT
+GAGAATGATACTAAACAACGAAGTATCGAAAGTTGTCATAGCCTACCCAGACAGACTAGTTAGGTTCGGC
+TTTGAAATAATAGAGGAGGCATGCAAAGCACACAACTGCGAGCTCGTGGTATTAAATAAGGAGGACAAAA
+CACCAGAGCAGGAACTAATCGAAGATTTGATCTCTATACTGGTATCATTTAGCGGAAAGTTGTATGGTAT
+GAGGAGCCATAAATATGAGAAGGTGAAGAAGTGTGTCGAAGAGCTTAAGGCTTAAATCATTCCAACCGGA
+GGAGGAATACGTTTACCTAACTTACTCCCTGAAGAATAATAAGAAGGTGAAGAGCAAGATATTACTAGAG
+AACTATAAACACCTACTACAGAAGGCTTTAGACTGGTTATGGGAGAGGACTAAGATAGAGAGGAAGGAGG
+TCAAGAAGGGCAAGAAAATTTTCGCTAAGGTTAAAGTAACCTTGCCAAAGAAAAAGGAAGTTTACAAGGT
+GTTGAGGGATGAGTTAGAGAAGGTTAACAATCTAGCTTCACATTACGTTGACAAAGCAATAAATGATGCT
+TACTCAATCTTGAATAGTTGGAGGAGGAGGGCTGAAAAAGGACAAGCGTCATTAAGGAAACCTAGATTGA
+AGAAGGTTTACGTTAGGGTAAAGTCGACACTTAGAAAGGTTGAGGGTGAGAGTGTAAGGATTACAGTAAG
+ACCTTACGAATACGTCACCTTCTCATGGTCTCACAAATGGTTTTCAAGGAGGGTTGAAGGGCTTGAGTTG
+GGTGAGCCAGTAATAAAGGAGGATAAAGTTCACCTACCATTTCGTTATAAGTTACCTTGGTTTACTCCCC
+TTGACTTTCTATCTATTGATAGTAACTTGTACACATTAGACGCTTACGATGGGGAGAAGTTCGTCACATT
+TTCTTTGAAGGAGTTGTATAGTTTGAAGTTCGGTATGGAGTTGAAGAGGAGTAAAATACAGTCCTTCGCT
+TCTAAACACGGTAGGAAGGGGAAGGTATTGTTGAGGAAGTACTCCCACCGTGAAAGGAACCGCGTGCTTG
+ATTATGTTCACAAGTTTGTGAACAAACTGTTGGGAATGTATCCTCTCACTATGTTTGCTGTCGAGAAGTT
+GAATAAGCAGTCAATGTTCCAAGACGCTGATGATAAGCTGTCTAAGAAGGTTTCAAGGACTGTATGGAGG
+ACTATACACCGCGTGCTTAAATACAAGGCTCCCCTTTATGGTTCTTTCGTTAAGGAGGTGAACCCACACC
+TCACATCTAAGTCCTGCCCCAGATGTGGATGGGTTTCCCGAAAGGTCGGCAGGATTTTCAAGTGTGAGAG
+GTGTGGGTTCACTCTAGATAGGCAACTAAACGCATCTCTCAATATTTACCTCAAGATGTGCGGGTTTCCC
+CACCTCTTTCTTACTCCCACTGGGAGTAGGTGGATTGGGGTTATCCCGCTAAAGGGGCGGAGGGGTATGA
+ACGGGGCGTTGCCCCGCGACTCTGGTGAAGCCCAAGGGCTGAGGATTGGATACAAATTCATGAAAATTCA
+ATGAAGCCCAAACCCCAACTCATTTGGCTAATTTTTACCAGATCCATTAAGGATCCCTCACCCATCATGT
+TAATATATAGTAATATTTGCATAGGAGTTGACAAAATATCGAGAAGCTTTTTATTTATAACAAGTTCACT
+CATTCTACTCTCACTACATAATATAGAGAGTAAAATTTTAATAGTTTCGCTTACCAGTGCCCTCTGTTCT
+GCAGTCTACACAGAAAGCAAACTTTTAATACTTTCTGCACATAGTATAGAGTGATGAAAGTCTACCCTAT
+CAACGCTAAATACAAGGTACTTATAGTGTTATTGAAACTTGGAGGAAGCGGAAAGTATAGTGATATAGAC
+AGAATGATGCGTAATTCTAACTTACGCTTCTTCATAGAACAATTAAGACAAGAAGGTTTTATTGAAGACA
+GATATGAGGGAAATAAACATATAATAAAGTTAACAGAGGATGGAGAAAAACTCGCTAAGAGATTAATGGA
+AGCTGAAGAGTTCGTAATGATGAAAATAGCTCAAGCGAGAGGCCAGATTCAATGAAATCCTTCTTTTTCA
+TTTTTATTATAGTTATTCTCTATTTCGTTCTTCTTCAATTAGAATTCTCTATTGATAGAAGAGAACGGTA
+AACTGAGGAGTTTAAGGTGAGAAAATGATTATCGGTATGGGAAAAAGTCCAGTAACTGCAATTCTGCAGC
+AATACAGCTATATCTGTGCATATCCTTGCTTCTTTGATAACAAAGTATTGCTGACTGAGAATAGAAGCAG
+GGCTTATATCCAGTACATTAAATTATTAGTAAGGCATTATGCAAAATACGGCAGGGCTCTTAAAATCGCA
+ATATGGCCCGACTATACTCCATTATATAAGGTAGAGAAAATAGCAAACATATACTTGTTTAATAATATAA
+GCTTCATAGTTCCTATACACGATTTATCAGAACTAGAGATTGTAGATGAACTAGTAGAGAATGGGTTCAG
+GGTTTTCGCGGGTTATGCTTCCGATAAGAAGCTTAGAAAATATGAACTTGATGACTTCAAAGAAGTAGCA
+AATTACGACCGGTGGTATCTAGGAGTATCATCTAAGCATGAGGTAAGAGAGGCAGTACTATATAATTTCC
+AGGGTTTTGACATAACAACATTTCTCTTTGGAAGACATGAGGATAGAAAGGACAGCAAAAAACTTGCATC
+AAATATACTGAATTTCGTTAAAGAGATCAGTAAGGTCAAAGGCAAACAAACTATTCTTTACGATTTCTGC
+GGTAAACTGGGGAGTTTAACGGGTGAAAGACGGTGATAGGCGTTGAAATAACTCCTAAATCCTCCAGGGT
+TATCAACACCTTGGCCTTTCTGCTGGAGAACGGGAGCTCCTTCGCTCACCAACTATCTCAAATCATGAAC
+ATGGACTCCAGAGAAGTATACCCCATGCTGAAGACCTGGATCCTAAAGGGAGTTGTAACGGTATCAAAAC
+AGGGTAGGAGGAACGTCTATTCGATCTCCCAGAAATTCAAATCTTTAATCAGCAGTGTCGTAAAGAAGTA
+TTCTTATAAGGGCAGGGAATTCATAATAGCTAAGGCTAAGGAGAGGTATAAGAGGTTCTTAGGGAGGGAT
+CCGGACCCGGAAGTATTAGCAGTAATAGAGTACTTTGTAGATAAAGCACTCTCTGGAAACCCCTACGTCC
+AAGGATCTCAAAACGAAAGCGTTGCAGAGTTGTTGGCCAGGGTACTGAACATTTCCTTATATGATATTAA
+TGAAATACTGAGGGAACTAGTCCAGGCTAACATCTTATATGTTTGGAGGAACAGAAAGGCAAGGTTAGAC
+TCTTCCCTTACGGCCTAACTGCCTTACCTAAAACTATGAGTAATTTTTCTCAGTCTCGTAATAAAAGTTC
+TAACTAGCGTAAACTCCCCAGTTTAATTTGTAAAAACTCAAAGTAAAAACAAACTAATTCTTTGAATAAA
+CTCCCCAGTTTATTGAGAAAAATAGAAACCTCTCTAAAAAGAGACTTGCTATTTATTACTACTACTCAAA
+CTTTCACAAAAAATAAAAACAAAAACAAACGTTCTTACACTACTTTCAATTTTACAACTTTTTACTTAGG
+CTAATTTTACGCTAAATTATAGCTAATTGAATTTTTTGTTTTATTTTTAGAAAAATTTTATGAAAAGAAA
+GAAGGCCTTACATACTTCTTTTTACTGGGCCTAAGCTTTTTCACTCTTCTGTTTTTCATTCTCAGAACTC
+TTAGTAGTAGTTATTACCAGTAGTCGAATTTTTCTTCAGTAAACTGGGGAGTTTAATTCTATCTCAGCTA
+TTACTAAAACTTTCTTACCTATTAATTTCTCCCCTATCTCTTTAGGAATAGAAATACTAAAGTAAGGAAT
+ATTTTCTTCTCCTTTTCTGTAATATTCCAAAGAAAATATCTTCACATTACTTAACTCTATTTTCTCTTCA
+TTGGTAACTATTGTTACGTTTTTTAATATTTTTCTCTCCTTAAGTATGTTAGAATACTCTATAGGAAAAG
+TAACTATATAATAAGGATACTTAACCTTCTCTCCCTGACTGTTAATCTTTACGTTATACTTTACCCTTAC
+TTTTAACTCCTCTTTAATTATCATATGTATGGATATTTTTAATTTTCCCTTATAAATCTTTCTTTATTTT
+AAGAGAGATTCCCTTCTAAATTATAGAAGAATCTAAGAGAGAAATATTTAAATACTAGAAAGTAATAACT
+ATACTTGTGAAAGAAAAATGGCAAAAAGAACAAATAAGACAAGAAAAAGCAAAAAAGAAGAAGATGAAAT
+GATAGACGAAGTACAAGAAAAATTTGGGGAATATTGCTCTGACCCAGAGAACTACACTGATGAGGCTTGT
+GAAAAGTTATTTTAATTTTTTTTTTTAAAAAAACTTTCTAAGAATATAGCATATAATTTTCTTATTGTTA
+TAATTCTCTCTTAGTACAGTAGTTTATTTAGGAGAGAAATATTTATATATTAGTTTAAAGAAAGTATAAT
+TGATGACGGAAAACAAAAAGAACAAAAAAGAAGTAAACATGACATTCATATCATTTCCTAGCAAAGAAAT
+TTTTGAACAAATATATAATGAGCTAAGTGAAGACGGTAAAAAAGAATTAGATAGAATGATGAAAGAAGGT
+AGAGTAAAGATATACTAATTTTTCATTTAATATTTTAAACTTTTTCCTCAATTTGCTAGCATTTTCTCAA
+TTTCTTCTCCTATCTTGTCGTCTAATTTCTGAATCCCTGGCATTGGCTTGAAATTAAACTTCTCCTTCAA
+TACTCAAAATTGGGAGAAAGAGAAGAGATAGAAAAGAAGAATTTACCACAGAATTGTGAGAAATTAAGGC
+AAAAAAGTAGTTTAACTCAAGATTGTGAGAAAAAAGATAAAATGAATAGGGGGTTTTACCACAAAAATGG
+GTAAAATTTCATTCTCACTAAAAATATATTCAAGTTATAATAAAAAGATTATTTTAAAAATTCATCTAAA
+TTTAATTCGGATTTTACAGTATATTCTGGATATTTCTTATACACATAGGATAACAACTCCTTAAGGTCCT
+TATTCCCAAATCTATTTATTAAATCGTTTACCGCGTTGGCGATATCTTGATTTACCTGCGGTAACTCCTT
+AGATGTGATTAAACTCTTATCTACGTTATCTTTAACTTCCTTAACCTCTATCCTATCCTTAAGCTCCTCA
+AGATCCTTATAAAGTTGGGGAGTAAAAGGACCATATTTGTATGGTTCAAAATTGTAAGCTAGATTAATGT
+TATATTCCTTTTGAAGGAGGAATAGATACTTCATTAACTCTGTCATATAGACTGGCCTACCTTTAATCTT
+AGACGCTTGATAGACTAAATATGGTATTACTACAGATCTAAGTAGGATAATTTGCCTCCTCCAATCCTCA
+GTTAATTTCCCTGTTAATGCTAACCTAAGAATAGACTTATATAGAGTATTTGCCTCATCTTCTAAGTTCT
+GTAGGAAATCATTAAATCGAATAATAAGTTCATCAACCTTTTGAAGTAGTTCTACGATCTTCTTTTGTTC
+CTCTAGGGGAGGTAAAGGAATTAGTAAATTTCTTATTGTATCTAAGTTAAGATTCCACTTCCCTGCTTGG
+TTTTTAACCACTTTCTTAAAAGATCCGTTTAGATGATACCATGAGAGTAAATAATATATATAATATGGTT
+CCACATCCTTTGATACAATCCGTATTGCCGTTAGATGATTACTAAAGGTTATCTTTTGATTTAAAGGCAT
+ATCAATAATACCAAGTTTCCCTATATGATCAATACTACCATTAGTATTGACCAATACGATATCCAAATGC
+CTGAGCAAATACCTCTCAATTTTTGGAGATTCAGGTATATATACAATTCTATGAAAAACAATCCTATCCG
+TTTCATTATCAATATTATCTGGTCTTAAATGGATTACTTTACTATTCTCATCTCTTTTCCTCTCTGAAAA
+ACCAGAACGTATAATAGCAATTTCATTAAGTCTTCTTACTTCCCAATCCTTAGGAAATTCGCCAATATCA
+GTCTCAACATAATCTCTATGCCCTATACCTTTAGTCAATAATTCCTTTCTTATTACTTTCGTTATAGTTT
+CTGTAGAATTTCTAATTTGAATAATATAATCCTTTAAGGTGTAATAAATATCAGTGGCCTTTTGAAGTAG
+TTCTACGATCTTCTTTTGTTCTTCTAGGGGAAGTATAGGAACTGAGCTATTTAAAACTATTTCAAGTGTA
+AGATTGGGTTGAGTACCCTTTTTAATAAATTTACTCCAATAAGGTTTGAAGTATAGATACCAATAATATA
+AAAATTCTGTATCTATAATATTCTTATTAGGTATTATTCCTATAATTGCTTGATTTGTCGCTACTGGTAT
+TTTATTAATTGCAACAAATCCTAAAGAACCATAAATTGTTAATAGTAAAGAATCCTTTGGAACTATCCAA
+GCATTAGAATTTTCTAATCCTTTTTCAGTAATAAATTCCTCAGTATTGTATAGATACTTACCAGATTTCG
+TTATATCTTGTATCTTTGCAAATGGAATGTTTCCGTTCCAATATTCAGGAACATTTCTTCTGGGTGTTCC
+TCCAGATTTTGCTTTTATTATAACATCTTTTAATTTTCTTACATCCCAATCCTTAGGAAATTCACCAATA
+TCAATCTCAACATAATCACTCATTTTCATCGCCAATGCCTAAGATCTTCTTTAACTCATTCAACCTTTTC
+ATAGCGTCACTTAAGTTAGTCTCCATTAATTCTATAAGTTGTTTGGGATCTGCATTTTCTTCCTCTAACC
+TGACTTTCCTATATACGTTAATATCTAATCTATAATCATGTTTCCTTATCTCTTCAACATCTACTACGAA
+GTACTGTTCAGTTTGAGGTATTTCCTCTCCTCTCTTAAATTTCTGATAAATTTCTAGAGCTAAAGGCAAG
+TCTCCGCATCCATCTATATCCCCCTTCTTATCACAATCCCCTATAGGTTTCCTAGTCGGTTTAAGTTCAT
+AGCCGTCGCTTTCTATGTTAAAGAAAAGTACCTTATCTGTAGTCTTTTCTCCCTTGTTAGGCCTTCTAAA
+GACTAATATATCTGTTTTAGCAGCTGAGTAAGGCAAGAAAACCCCTGCGGGTAATGAAAACACAGCTTCA
+ATCTTGAATTTATCAACTAAATCTCTCCTAATACCTTCATAGTTCTCGTTAAAGAGGAGGCCTTCCAGCA
+TTACTGTAGCTACCCTCCCTCCAGGTTTGACCATGTCCATTATAGCTTGAATGAAATAAGTTTCAAATCT
+CTTGAACTTATACTTAAAGTTACCAGTAGGTTCACCACTAAATGGACCAAAAGGCGGGTTAGTGGTTATA
+ACGTCTGCCTTCTCCTTATATGCACCTTGGACTGAGCCAGAGAGAGCATCTAGGTTCTCAAAGTTCGATG
+AGCCGTCTCCATGAAGCCTTAAATTCATTAGCCCTAACTTAAAGACATCTGGAGCTTTTTCTATACCGTA
+AAGGTTATGCTTTAATTCCCTTATTTTTATTTCCTTATCAGCTTCATTGGTAATTTGTCTCTCTATTTTT
+TGTTTAACATATTCAAAAGCCTTAACTAAAAATCCTCCAGTTCCAGCAGCTGGATCTAATATAACTTCAC
+CTGGGTTGGGATCGATAATTCTGACCATAAAGGAAACTATATTCCTAGGCGTAAAGAACTGTCCGTAATT
+ACCTTGTTGCCCAAGTTTATACATCAAAAATTCGTACCCTCTACCTAAAGCATCAAATTTTCTTCCTTCG
+TCTCCAGGTAATTTCAGTAGCCTAAGCCTATCTATAACCTGGATTACCGTATTATCGTTTTGCATTCTCC
+TGGTTTTGTTGGAGAATATTTTCTTGATTATACTTCTATCTTCATCTATTTTTGGATCTCCGGTATCTGG
+TAAATTAGCCAAATCGAGAAACATTTTATCCAAAAATTCTGTTACTGTTTTGAACCCCTTACTTCTAGCA
+TAATTTCTAGGATCACATGCCCAGTTAAAGAATCTGTACTCACTTGGTATAGTGGACTTATAGTCTTCAC
+CCAACTCTTTAGCTATGTTTTCCTGGTAAATTTCCTGCTCATCAAACAACCTCAGGAAAAACAGATACGA
+GAATTCCTCTAAATATTCCGTTGGTTTTACTATATCGCTTCTAAATATATTAGCAATATTCCATAACTCA
+TCTCCAAAGGAGTTCCAATCAACTTCTTTACTCTGTTTCATCGAGTTTTCGTAACACGAATTAGCCAGTT
+TCCATCACCGCCTCATCATATAGTTTCCAGAATGAGTTTATATCTTCAAAGCACCCTTTTACCTTAGAAA
+ATCCTCCAGCTTGCTTAACCACCTCAGCGTTGAAAAACGCCTTCTTATCTATATTTGGGTTTCTCTTTCT
+AAAGTCATAGAGTGCCATGAATAATCTTTCACATTCTTTAGGATATCCTTTCTTGTTATACCATTCCTTG
+ATAAGATTCCTTTTCCTTTCCTCTGGAGTCGGGAAAGTTTTCAATCCCAAAGCCACTTCTACGAAGTCTT
+TTAGGGTAGCGTCGGGTTCTCCATAAGTATCCTTTAAAACATCCTCTGTTATGCCTTGTTCATTAAGGAA
+AGCTTCAAGCTCCTTTAAATAATTCTCGTTTAACGTTTTACCTCCATTTTTCCTATAAAAATAGTCGAAG
+GATCTGACTGCGGTTTCAAATTGTGTCTTCTTTATTTGTACTTCTTCTTGTGCTTGTAAATAAGCCTTTA
+CTTGTCTTACTACTTGTTCACTTATTCCTTTTAATTCATTCTTAAAATTCTCAGGAGTAATTACTTCAGC
+ATAAACTATACTTACTGGAATATCTAAGATTACCATCTCTTCTCTCTTTTGTTCTCTCTTCACTTCCTTC
+TTGGCAGTAGTCCTTTGCGGTTCTTCTGTGGAACCCATAAGCTCGCTTATTTCCTTCTCTTCTTCCTCTT
+CTTCTTTCACGATGTCCTCATTCGTTATCGGCTTGTCTTCTTCATTTTCTAATCTCCATGTGTCCACAAA
+ATCAATAAGATAGAATTTGTCCTTTACTTTATTTCCCTCTTTATATATTCTAGTCCCTCTACCTTTCATT
+TGTAAATATAATACTCTGGATTTTGTAGGCCTTGCCATAACTATTACTTCTACGTCAGGGGCATCAACAC
+CAGTGGATAGTAAATCTACAGTAAAAGCAACTTTGATCCTAGAGTTAGGACTTTGGAATTCTCTAACTAA
+TTCCTCATGATTAGGAATAGCGGAATGAATAGAGCGGAAAATTTCTTCAGCCTCAGCATTATCAGGAGAG
+TATCCCATTAATTCATTATATTTCCTAATAAAAGCTAGCCTGAGATTTTCTGCATGCTTAATACTAGCTG
+CAAAAACAATAGCTTTCTTCAGCTCTTTAGTTTCTTTAAAGTTTATTGCTTCGAAGTATTTTTCAGCTAT
+TAATTCATTCCTCATTGGTATATCTACTTTTTTACCTAAATCGTTAGGATCAAAATCATAACCTAAATCA
+TGAATTCCATAAATATCTACATTTGTAAGGAACTTATAGTAAATTGTATCTGCTAAATAGCCGTCTTTTA
+CTCCCCTACTATATGTATATCTAAAAATAGGATATCCGAAATACGCAAAATTATCAACATCCTTATCAAT
+TTTAGGGGTTGCAGTAAGCCCTAACACTGCTGCTTTATTAAAGTATTGCACAACTTTATGCCAATCTCCA
+TAATACGATCTATGTGCCTCATCTAAAACTATCAATTGGAAATGATCTGAATTAAATAGTTTGAATTTCT
+CATCTACATACAGCATTTGTACTGTTGAAATGATTATATCTGCAGATAAGTCATTAATATCACCACTTAA
+TTTTCTTATATTATACTTGTCTCCTAACCTAGCATTAAATCTCTGATAAGTTTGGGTTGCTAGGGAATCC
+CTATCAACTAAATACAAGACATTTTTTACCTTGCCCTCATCAAGGAGTTTCGCTATTGCTGCCATTACAA
+CCTCTGTTTTCCCTGTTCCAGTAGCCATTTCTACTAACATTCTCTTTTTACCGCTGAGAAAAGACGTAAT
+TATTTGCTGTACTGCAATCTTCTGATAATTTCTTAAATCAAGGGCATTAATCGAACTGGAAACCGGATTT
+AATGTTACTGAAACTTCTTCAGGCTTTAGAAACCTCTCTACTTGGGTTTCTACTGTATTTGCATCTAGGT
+TTTGCATGTACCATTTTTGACCATCACACGCATAGATATAAGGTACGTTAACTCCATATTTTCTTAGAAT
+TTTAGCACTCTCTCTAGCCTCTGCTATTGCAGCTCTTAAATCAACACCCTTTTTCTTCGCCTCAATTAGA
+ATTACCTTATCTCCTAAAATTAAAGTATAATCTGGTCTATGTTTTCCTTCATTTTCTGTAAACGATATGT
+TTGGGAAGAGATCCTTTAGGGTGTGGTTTTTCTTAAATTTCTCGAGATTCCATCCCAACTTCCTAAGATG
+TTCATCGCATAACGTTATCGCATCAGCTTCGGTATTTGGCATGATAATAAATATGCAGAAAAATTTTTTA
+ACCTTTCGGGGGTTAAGGGGTGGGAGCCCCTTATACTAATTTTAGAAGAGAACAGCCCCCAGTTTTTTGA
+AGTTAGAAAAGCAGTTTAGCAGTATCTGAGACAGGTTAAGCAGTCCTGGAATAAGCAGGGTTTTAGGCCC
+TAAATTAGCAGCTAAGGCTATAGGACCTTGTAAAGCAGTTTTTCTAAAAACATAGTTAGTAGAAAACTCC
+GGAGCTAGTAGGGATTAGCAGTTTTAGGTTTTGGGTTATAGGGCGTTAGCCCTTATACTGTGATAAATTC
+TATTTGAAGAGAAGGGAATTAAGGTTTAGAGAATAGGAAAGAATAAGGATTAGCGCAGTTGTATTTAGAA
+AAGAATAGTTTAGAATTATTTATATAGAGAATTGCAAGGTAAGGGATTATAATAATAGATGAAAGCCGTT
+ATGAATAAGATAATGGGCTAAAACGAAAAGACCTGGAGTAGTTAGTGTTGGGAAAATGGTTATTGAGCTT
+AGGATCCTGGAAGGGTATTAAGTAAAATAGTTAGTTAGAATGGGATATAGCAAAGAAGGAATGAGACCCT
+AAGATGTTAAATTAGAGGGTATTAGGTTATAGGGTTATTTAAGGCTAAGTTATAAGAGTAAGTAGGTTTG
+TGTTAGTAAGCAGCTTAGAAGAATAGTATAAGCAGAAAGAGAGTAGAGGTGCTAAGCAGAGAATAGTTAG
+TAAAGATAGTAAAGTTTAGAGGCAGAGGAGTAAGCAAAAAGTAGAGAAGAGAGGTTGTTGTTTGTTAGAG
+TAAGAAAAGCTGCTAAAGAGTAAGCAGTTTAGAAGCAAGGAAGATAGTAAGTAAAGTTTAGCAAATAGAT
+CAGATTTGAGTTAGACAGAAGTAAAAAGAGAAGAAGCAAAAGTAGAAAAGAAGAGACAGTAAAACAAAGC
+TAGAGTTAGAAAGAGTAAGAATAGAGTTTGATAGTTAAAAGCAAAAGAGTAAGAAAGTTTGAGAATTAAA
+GGAAGCGGGCGCAAAGCCCGAAAATTGGGTATAGAATTTTGTTTAGATTATAAGTAAAAATTAGAGAATG
+GGGGTATAGAGATGAAATGCGGTGCACGAAGTTGCATAGCCGAAGCACAAAGTAAAATATCCACAGCATA
+AAGTCATATAATAACTGCATTAATTCTAATGTTGAATAATTCTTTCTACTGAGGTATAAAATTTGCATAG
+TTAGGATATGAGGGGTTTTTAAATATTTACTATTATTAGGATGAGGAAAGATGGGAGAAGAAGTAAATAA
+TCAGTCAATTCAAAACCAACCTCAGTTAAATCAAAATAATTTAAACAAGGGAGATAATATCTCTTCTAAT
+GAAGAGAATGTAAATGAAAAGAAGAAAGAAGAAAAGAAAAGTAAGAAGCAGAAAGTAGAGAAGAAGAAAA
+GTGATGATTACTTATTATTAGTATATCCAGAAAAAGCAAAGTCTTTCAGAGCCAAAGTACAAAATTGTAT
+TATCGAAATATTAAAGAAAAACGAGTTAATGAACGAGAAAGACTTAGTTTTGCAGTTGATTTTTGAATGC
+GAAGCTGCTAAAGAGTACTATAAAGTAACTCACGAGACTCAGTACCTGAGGAGAATTATATGGAAGATGG
+CGAAGGATAAGACGATTTTGAGGGCGAAAATAGTTGGAGATGAGAGGTATACATGGTATTTATTACCAGA
+GAACTTAGAAAAAGTAAAGGATAAGTTATTACGTAGGGCCTAAAAGGATAGTTTTCTTAGTTCCAGCTGC
+TTGGATTAAGATCTTATTTTCTTTTAGTTTTACGTCTTCCAGTAGCTCCGGATCCTTTGCTGCTGCTTTA
+AGCAGTTCTAAGTCTGTCTTAAGTACCCTGTACTGCTTATCTCCTATCTTTATTATTGCATAATCGGTAT
+CCTCTTTGAGGACCTCTATCGTTACTTCTTTCAGCGTTAAACTCCCCAGTTTACTGTTAGCATTATTGGC
+AGCAGCTCCCTGGGCTGCTTGTTGAGCTATACTTTCAGCCTTCTCTTCTCTTTTGCCGTTAAACTCCCCA
+GTTAACTGTTCTTGTTTCTGTTCTTCTTTACTTTGTTGTTCTATCTCTTTCTTTAACTTTATTGAGAATA
+TCTTAACTTTGTTTTTCTCTACATCAGAAAGTTGATTATATAGCTGCTGCAGCTTATCAAAACATTCTTC
+GTATGCCCATGAATGTACTTCTGCAAAGTCCTTAGTGCTTTCCTTTCTGAAATTATGCATTACTTGCTCC
+GGATGTACACTAAGCTCATTGCAGCTTTCTATTTCAATTGCAATAGATCTATCATAAATGGGCCTCAATG
+TTGATTTGTCGATAGGTATAGCTACTATATCAGGTCTAGACGTCAAGCTCTGGTCTTGTTTGGCTGGAGT
+TACGTAATAACCTTGCTTCATGTACCTGAGCATTACCTTCATGGCCAGTTTTCTACCTTCAACAGAAGGA
+GCTACTGCTTTAACATTTCCAAACAGTCCCTTACCGTAGTAGAGAACCTTTTTGTTTCCTTCCTTTTCAA
+CGTCTATATAACCTAGTTTCTCCAATCTGTTTACCACATCATTCACCTTATCCCTGTCCAATCCTAGCTC
+CTTTAATAGATCAACTAAATACATCTTCTTCCCATTTTTGAACACGTGATATAGAACCAGTTGTTCTAAT
+ACGTTAGGTTTCTCTATATATTTCATAATTGGGTTAACTATACTCTCTATGTCTTCGCTCTTAGGTATCT
+CTCCGGTTATATATATCTGCATTCTGTCTATGACTTTCTTCAGCTTCTCTGGGTTCTTTTTCACAGGGAC
+GTAGTTTACTTTAACCCTCACTGGGACAACCTTATCTCCCTCTTTTCTCGGTGTGATTATGGCTACAGTT
+TCGCCTACTCCTAGGCTGGGTAGGATTTTTTGTAGCTCTGAGCCGAACTCTGGAAATATTTCCGCAAACG
+CTTTAGCGTCATCTCCTTGTTCCTTCATCAACAGCTTCACCCCAGTATTGCTCATTATTGATTTAATGAG
+GGGTTTGTCTAACTGTCCAGTGTGTTGATGAGCCATGATAATATGCATACCGTACTTCCTGGCTTCGCTT
+AGAATATCATCTATAACGCTCAATGATGCAATATTCTGGAACTCGTCCATAAATGCAATAATAGGAATCC
+TTTCCATGCCTAATGCAGCCCTCGCTAATGCATAGTACCATGTCTTGAAGATCCAACCAGCTAAAATCAG
+GAATGCCGCATCATTTCCTACTGCAGCTTTTGATGCGTTTATTACTATTATGTTCCCGGGCTTGAATAGT
+TCCTTATCATCTATCTTACTCCTACTGAATATCTTTAGGAGAAGAGGGTTTGTCCCTAACATCTCAAGCC
+TCGACACAGCTGAGAGGAAGCTCTGTTCCTGCATGTTTTGGAACATCCCTAATTTATTTTCCCAAGTAGG
+ATCATCAACTGGGAGATCTATCTCACCTGTCCTCAGTTTGTAAATAATTCTGTATAGATCTCTAAATGTA
+GGTTCTGGAGTTTTAGAATAAAGTAGCTGCATTGATACTTGAATGATATATTTTACGTAAACTGCGGTAT
+CCTTAAGTCCAAATAGTTTCTCGAATATTTCCATAACATTGCTGAACCCTAGTAGCAAGGCTTGTTCTTT
+ATTTGGGATGTTTGGCAGTGCTAATGGGTTGATTGAAATCCCTGATTCTACAGGGTGGAAGTAGATTAGT
+TTTTCGTCATCTGCAAAATATGAAGCAACCTCTTCAGCCATGTCTCCGTGCGGGTCAAAAATCATGATTA
+TCGTGTTATTGTAAGCTTTCTTTATAGCAGTTATCAAGGAAATAATTGTTGTAGTCTTCCCAGCACCAGT
+GCCACCTATGACATATCCGTGTCGATAAAGATCTTCTAACTCTAACATGTAAGATTTACCAGATTGGATA
+GTTTTGCCTATTTCGAAACCATTCCTGTTAGGAGGAAGTTCCGGAAGTATCCCCCCGGTTACGAAGTTCA
+CTGGGATTATTGATGGATTGGGAATTACAGCTACTTTATTTATTTTCTCTTCATCAACCCAGAGCCATCT
+CTTAATTTTTAATGAATGAAATCTAGGCACCCTGGGGATATTATCTTCCCATCCCTTAGTTTTCCTAATT
+TCTAGTCTTAATTTTCTAGACCTAGTTAAAATAAATTGCTGAAGCTCCTTAGTCAATTCTTTTATTCTTT
+TTTTATCATCTGAAAGAATGTATGGTTGTAAATAGTATATGTTATCTTTCGCAAATTGCTCTAATCTCGA
+AGCTAGGACTTCCCTCTGTCTTTTGCCTATTATAGATTGGTTCCTTTTCAATTTATCAGAATATTTGAGA
+AATATCTCGTTGAGCCGTGGCTCAAGGACTATCCAGAGCCTTAGTTGTTCCCTTGGCCGCAATTTAGTAA
+GAAAACTGTTGAAATCGTTGAACTCGGCACCCCAGTAGAAATCTTTCTCGTTTTTGAACAAAATACGACC
+TACGAATTTAGGGACTGGAATGTTAACATTTTCGTTAACACCGAAGTCCTTCCTTAAAACTTCTAGTTGT
+GTATTTGTGTAAGCATAGAGGTGCATTAAATCTTTGTCTTTAAAATATATGATCTCGAAGACATGTCCTA
+GAGAATTTAGGATGTTGAATGTCTTATCGTACTCGACTTTTGGGAATAATTCGTAGTATTTGATTACTTC
+TTTTTTGCCCCACATCAGAAGAATATTATTTAAAAAGGGCTCAGTGTGGCAGTCTTTCCTCATACTCTCA
+GCATGTCATCTCTTCATCATTGCCCTAAATTTCTATATGTAGAGAAAGTTTTATAAACTTTGAATAAACT
+CCCCAGTTTAATGAGAAAAAATGAAATAACTTTAGTGAGCTAGGAAGAGTACTACTATTAAAAATAGCCA
+ACCAGCTACTAATATGTAGCCTAATATTTTCTTAGCAACCTCAGCAAAAACTAATAAAATGTAAATAGCA
+GTTAGCGGGATTAACCATGCTATAATATTAGCATATGTTGAAGCTAAGCCTGGGTCTTGCTTTAACAATG
+TGTTCTGCAATATACCCTGAATAATCCCCACTAACCAATTATATCCCTGAGCTACAAGATTAAGAATTCC
+CTGGAAGAAATTTGAAGGAGGAGCTGGGATTTTCTGAGCATAGCTCTGAATCTGTGTCGAATTGATAATA
+CTGTTGTTTGTAGTTGTTGCAGTCACAGTTACTCCTAATACTATTATAACGAATAGAGCTAATAGAGTCC
+TCATTTTTGCCCAGAATAAAGTATTTTAAAAAGCTATTAGGTGATGGACTGGTTTCTGTCATTATTTAAC
+ATTATATTAGTTTTAGTATTCTATGAGGTGTTTCATGGGATACTTTACTACAAAAGTAGGGAAGTGAAAA
+GGGAAGGAAGGATAAGCGTGAGAGTTTTAAATATTAACGAAGAAAACGCGGTAACACTTAACAGTATATT
+CTTTAGAAACACTATAGTTTTTCTCTCTAACAAGATAGATGAGAAAATCTTAACACATGAAGAAGGACAT
+ACTAAACAATTCAATTACATTTATGCTTTTCTGATAGCAGTAGCTGCTTTGTTATCAATTAGTACTTTGT
+TAGCAATCCCAGCTATTCTGGTAGGGAAATTCTTATTATGGAAAATGGAAAGGGATGCGGATCTTTACGC
+ATATACTAAATATAATATAAAATACGAAAGCGTTGCTGAGAGGCCTAAATCTAAAATTGATAGAATAAAA
+GCTTGGGTCTTTGATACTCATCCACCTGACTGGGTAAGAGAAAAAGAAGAATATTATGAAAAAAAGATTA
+GTTTGATCAAATTATTTATTCAAGATCTGACTTCTTAATCTCCTATACTCAACTATGCCTCCGATCAGAC
+TTACGAACCCAATTAACGCCAGAAAGTCCGTTATGTAGCTAGCATCGCTCCCCAGTAAGCTGCTAAAGCT
+GCTGTCGAAAGTACTAGCTATAGCTCCTCCTAACAGCGCTAACCCGGCTATGAAACCTCCCACTGCAGCC
+TCATGGTTGCCCTTCCTATACTTCGTTACTGGCATCTTCACTACTGCTTTTGCCTTACATTTTATCACTT
+GTAGCCTTTTCATTGCGCCTCATCTTATCTCTTTTTAAAAACCCCCTATCTTAGAATGAAGCTAAGAGAA
+TTAACAGTAGGTTGGCTATACACGACAAGTGGAATAGATGAGAAAAGTTTCCCTATCGGAATAAAGAACG
+TGAATATGAAAGAATTACTAGTAATATTTCCACTGCTAATACTGACTATCAGTTTTGCTTTTAAGAATAT
+AATGATAGCAATGGCATTTATAGCACCAGTGTTCTTCTTCGTATTTTATGAAGAGAAGTCCATGGATGAA
+TTTCAGTACATATATCATTTCCTCAGGTTCTATCTCAACGACTTCCTGGCGCCTAAAGAAGAGAAAAATA
+AGAAAGAGAGTAAGAAGAAAGTAAAAACTTTTGACATAAAGAAGTTTAAAGATGAAATAATAATTACTGC
+ATCGGCGTTATTAGCATTAACAAACGTAAATGCGTTCATAAATACGTTTCAGTTGAAGTTTTACTACCCA
+ACCTCATTGAGTCAAGATCTACTCTTCGCCGTTGGAACTGGTGTAGCAATAGGATTTATTATATCGAAAA
+TTAGAAAGTAAAAAATAAGTTAATCTATTTTTATCACATCAACTTTTCTTTTGCTTTTTAGTCCTGCAAC
+TATTTTAGGGTCATTGATATACAGCGTAAGTTCCATAGGAAATGCCCTATACTTTTTTGCTAGTTCTATT
+ATCTCTTCTGGATCCTTACTTCTTATTGCCAGCATCAAATATAATTATATCTACAGGCTAATAAATTAAA
+CAAAACGATTGCTTTCCCTAAAATTACGTTAAGCCGAAGATCAGTTTAAACTAGTTGCTTAAGAGAAAAT
+AAGGAAAAACGGAACTGCTGTTAAAGTTTTCAACTCAACTTGTTTATTTCTTCATTTATCTTCTTCTGCA
+CTTCACCTATCAAGTCGTTCAAACTGACTACCTCATACCTTACTTTTCCGTTCCTTATTGCATCCCTAAC
+TTTTCTTTCTCTCTCAGTTAGAGAACTAGATTTCCCGCTCTTAACTTCAATGAAGATTACCTCTGGGTGT
+ACATTATCGTCAGAAAGTCCTTTGAAAGCAATGTAATCCACTGGACTACCTAAATGCCTGAAGTCCTTAG
+GATTAACTTGATATTTGTCTGCCAGAAGTAGAGGAGCAAATTCTTCCCCTATTCTTCCTAAAAGAGTATT
+AACTGATCTAGCTATAGCGTCCTTTCTTATCATTTGTTCATTCTGTTGTTTCCACATTTCCAACTGCGCT
+TCATATTGCTGTTTTATTGATTGTTCTAATTGCTTCTGTAATTGTTGTGAGTGTTGATTAACCCAGTTAT
+TGAACATCTGTTGAGCTATTTGTTGCGAATTAAGCTGAACTTCTGTTATCTTCTTATTTAGTTGCGAAAC
+CTTCCTTGAATAATATGCGATAACTATTATTAGGACTATTAGAAGTAGAGCTGATACCCCACCTAAAATT
+TCCACTAACATATTTTCTAAATCGAAAGAGAGAATTATAACTTTTAGCACTTGTAAAGTTTGCCCTTATT
+TTACCTTAAGCACCTAGTATAAACATCCCTTTTGCTTAAGGTGGTTTTAGGACTAACTCCCGTAGAGTTT
+AAAGTTAAAACAGAAAAGTATTTAGCTATAGAAGGAGAATAAAAAAGTGAATGACGATGAGGAAGTTTAA
+CTATAACGAAATAGTAATCCTCAACCCATTGCAGACTAGGTACCAAATGATGTCTTCTAGGGTATTCATC
+TCTCTCCATGCTGCAGCAAACGACGGAATTTACAGAATGAATAGAAGAAAGTTTGTGACAAAGTACGGTC
+CAAAGACTATAGGAATATATATGCTAGGAGCTTTCGGCGCTCTCATTTTACTTATAGGTATAGGTATGGC
+AGCTTATCCGTTCACTCAGACTACTGGGATGACTAGTGCTGATGGTCTAATTGCTATAGTCATAGGAGGG
+CTTATGTTATATTTTGCTATAAAGAATGCAAAGAAAACGGTTCAGAAAATAAATGAAGAGAAAGGGATTG
+AAGGGGAACTTGTAGTCCCATGGAATCAAGTTAAGACTATAACTGTCATGAATGTGAGGCAAGAAAACGT
+AGCTAATAGGCCTAGCTTAGTTCTCAATACTATAGCTCCTACTTACAAGGAAATAGGTGACTGGCATGTA
+CTTACCATAGACGGGAGGGACATAACAATACCTAACGTAGATGATCCTTATAATAAGCTAAATTACGTAA
+AAAATAGATTTAATTTAAATTTTAGTTGATTTTTTACATATATCTTCCAGGTGGTGGTTCTGAGGACGTA
+GATCCGCCACTATTATTTTCTACTACTACGGTATTTCCGGATCCTCCTCCGTTTTTCTTTCTGAATGCTC
+CCATCATATGTTCTCCTGGTCTTAGTCCGAAGACAAAGAAAGCTAGAGTGAACAAAAATTCCCCATCCAT
+AGCTATAGGGTCGATAGCAAACATTAACGCTCCCAATGGCAGTGTTGCCAATATAGCGAATGTTACTGCA
+GCTATCAGCCCAGCAACCATAAGTCCTATCAATAAGTCTATGACCACCATAGCAATTTTTCTTGTCCATT
+CGAATATCCATAGAGTAGCCCATAAGGGAATTGTGTCTACTATCGCTAGCATTACAGCGTACTTAATCGT
+TGCTATTGCTAAAGTAATAGCTAATAAGAACATAACGAGGGACAAGAACATCGACAACGCATCACCAAAC
+CCAAACGGGATGCCATTCATTAAGGCAAATAATGCAGTAAACAATGTAGCTCCCCCTGTATATTCAACTG
+TTGCGATCCCTAAGTAAGGTCCTGCAACAGAATATATTATAGAATTAATGAAATTCGCAGCGTAAGTATA
+AATTGTTAGGCCACCCGCGAAGAACAGTCCCCAAACAGATAATTTGTACATTACGTCTCCAGCAAGATCC
+ACGAGATCGGCATACTCTCCCCTTATAGCGTTATAGGCGATTGAGAAAGCTATGAAAAGCATTGCGAGCC
+CAACGCTAAAGTCTTTCATTTGGTTGTAAATTGATTGTGACGCTGGTGACATGGTAGGAGTAGGAGAATA
+TGTCATCCATTCCAGAGGTGCTCCAAAAATCTGTAGTAATGTTGTTAGGAATCCTGTAAACGCATTAGCG
+ACAGAGTTAATTAATCCAGAAATTGCGCCTGTGATTGCTCCTTCTATCCACCCAAGAGGTGAAGGGGGGT
+TTGTAACTGTAACCAGAACTGCCCCAGAACCTCCAGCAAAATTCTGTTGATTAATTACACTTGCTGCAAC
+TATGTATTTACCTGGATCATTAAAAGTATAGGTAAAAGAAGTACCTCCAGTAGCGTTGTACACTATACTT
+CCATTATATAGAACAGTCCATATTACAGTTCCAGACATGGAAGGACTCCATGAGACTGTATAAGTTTCAG
+TATTGCCTGTGTACGCTGAAGTAGGACCAGAAACTTTTACCTGTAGTTGCACTAGCGTAATTTGTACATT
+TCCTCCTATCTTACCTCCTGTAGCAGCTGCAAGAAATATCGCTGATGCCATAGCAGCAGCAAACAACACT
+AACGCATAACGCTGGTCGTATCTGTTAGCTAATATTGCTAAGAGTATGAGAGCTGCTGGTATCAGTGTCT
+GCAGTGTAGCTATAAACTGGCCTAAGCCACCTGGACTTCCTCCTCCACCTCCTTGTGCCGTTGCTATAAT
+ATTTCCTGCTCCTGAAAGCAGTGATGGAAGTACTAATATTATTAATAGGATAGTTAATGCTTTCCTCATT
+TTCCACTCCTAATCAAGCTCTTTTTAAAAAGCTCAGTTGAATAAACTCCCCAGTTTACTGAAGAAAAATT
+CAAGCCTAATCTCTTTTTTCAAACTCCTTAACAAACCTACTAACTAGTCCTAACACTTCCTTAATCTTAG
+GTAAAAAAGCGGATAAGGGAATATAGTAAGCATTCTCCAAGCTTATGTCTGGTTCCCTTGAGGCGATAAC
+TATTAAATAACTTTTATCACACGACCTGCTTTGTGGGTTACTTCAGAATTATACAAAAATTTATAAATAA
+TTATACCGAGTATTACTCATGGGAAAGAGTAAGTACAAGAGGGATTGGAGCAAGTACGACGAGAACGTTA
+TAACTAGATACGAGCTAATGTTCCCCTTCTACGTCTTCCAACACTGGTGGGAATTACTAGCAGAAGAGAA
+TAGGAATGCCAAGAAAACCTACAAGGCGCCAAAGGAGTTCAACGACTTCCTAGCGTTCCTGCACTTGTTC
+CTACCTTATAGGGCCATAGAAGGAGTATTGAGAGCATTAGAAAGACTGAAAATCATCCCAACAAGCCTAG
+ACTACTCAACAATATGGGAAAGAGTAAGAAACATGAACATAAAATTCCCAGAGGCAAATGACCAACTTGA
+AGTAATAGCAGACGCAACGGGAATAAGCACAAACAAGGGAGGACAATACATTATAGCAAAATGGGGAAAA
+ACCAAGGACTCAAAATTCCTCAAGATCGAAATAGTAATGGATAAGGACCAATTCAACGTAATAAACGCTG
+AAGTAACCAGCAACGAGGTTCAGACTGCAGTTAAGACGGTTAAGGATTTACAAGATAAGGGAAAGAAGGT
+CAAGAAGTTTTATGGAGATAAAGCTTATGATGCTAATGAGGTTTACAAGACTGGGGTTGAGGTTGTTGTT
+CCACCTAGGGAGAACGCCTCCACTAGACGCGGTCATCCTGCTAGGAGAAAGGCTGTAAGGGAGTTCAAGA
+GGTTGGGTTATAATCGTTGGAGGGAGGAGAGGGGTTACGGTGTTAGGTGGAGGATTGAGTCCTTATTCTC
+TGCTGTGAAGCGTACTTTTGGGGAATCTGTTAGGGCTACAAGTTTTTTAGGACAAGTGGTTGAGGCTAAG
+CTCAAGTTCTGGGCTTATGCATGGATGGTCCACTTGGCTAATTCTTTAGTTGGTAGAGCTCCGGGTATTA
+GGGTGTGAGCTTGCGAATAACGTTGAAATAAATATTAATTACTGAAAAATTCTCAGTGCATCATATCATG
+CTTATGAAATAAATTGAAGAGATCAACAAAGCACACACGACCTTAATTCCCTCAAACCTTCCAGTTCTTC
+CGTAAGTTGGTCTTTGTCTATACCGTTACCGCTCTTGACCTCAAAGCCTATGCATAAGCTCTTCAATTCG
+GCATCCGTAGCTATATATAACGCATCTATAGCCCTATCGTTGGGCAGTTTAACCTCCTTAGAGGAGTACT
+TTATGCCGATAATTTTCCTAGCCCAATCGTCGGCATTAGCTTGTAAAAGCGTCATTACGAAGTTAGGGTT
+GTAAACTATTATCGTCTGTATTATGTCGTGTACATATACAAGGTTAGAATAGTTGGCTACCATTCCCTAA
+CCCTCCTTACTACCTCTGAAGGCAATCTGTAGAATACTTTATAGAAGTAGGAGTAGAGGTCTGGTTGGAG
+TTTCTCGCTAACTAAGAAGAGCTTGTCAAATACTTCACCTATGGGCGGTATACTTTCGTTCCTCCATATT
+AGGTCACTCAAATACTCCTTATTTGATGAAAGTATGAAGTCCTCTGGGTGGTCGTCGTTAGCTCCGAAGT
+AAGGCGGGTCGTAGATATGGCTCATCACTTCCGTGTTCTCTGAGATTTCGTTAAGCAATAACTTGTTATG
+TTCTAACAATAGTTTAGTTGAATTCCTCCTAACCTTAGTGAGGACAGATCCCAATACTCTAGGATTATCG
+AAACTGCTCCATATGTATTTAGGCAAAGCCTCCTTAAGGAATATGAGCATTGCGTTAAAGGCCTCAATGG
+TACCATCTTCTGGGATTATTAAATAGTCCGAAGCCCTCAGAACAGGCTTTATTGTGACTACGTCAGAAGG
+TGAGGTATCTATCAGTATGAAGTCATATTTTTCTCTGAAGTTCTCTAACTCTTTCTTAACTGCAAACTCA
+TCGAACATTGGGAAGTAGCCTTTGAACATTGCGTGGAAAGTAGATACGTAGGATCCCGGGATTATGTCTA
+ATGAAACTTTTACTTCTCCCTTAGAAGTCTTGGAGACGTGGAGAAAGTTCTCTACAATTACGTCCGATAT
+CTCCCTTATTCGGTAGACCCAAAATCACCTCCTTGAAAATAAATCTATATTATTAATAAGCGGTTCTATT
+GATTTAAATAGAAAATCTTTTAGATAGAATAAATCATCAGAAAACAAGAGTATTAGGAGTATCCTGAACT
+GCTCCCTCCTCACCTCCCCCTTGAACACGGTGTACAGGGAGTAGAAGGCCACGGCCAGCACGAAGATCAA
+CGTGCGGAAAACAAACTTAGTAGAACTAGTAAATGGAAGAAAAGCCTTAATGTTCCTATAAGAGGTCTCT
+ATGGGACCCCTTACCTTATTGTACAAATCCAACACCTCCCCCTTCGGTAGGTCTAGATTAGTAGCCCTAG
+CAAAATAAACAACACTCTTCTTCTTTCTCCTCACTTTTTCCTTGCTGTACACGAGAAGCCTGAACTTGAC
+CTGCTCATCCCTCCTATGCCTCTTACTATTAGTTGCGTAATCCCCGTCAAACTCCTCATAAACCTTAACA
+TCCCCAACAGGCACAGCAACTATATACTTAAACTGTGAAATGAAGTTGAGCACATCAACAGTATAGAAAC
+CTGCGTCAAGAGTTATCAACCTTATCTTGAACCCCATCGCGACGACTTGCTCCACGAGGGCCTTCACGAT
+CTCTTCCTTAGTCATCCCCTTGACTTGAGTGACGAAGGCCAGTAGGAGCACTTTCCCATTAAACTTTGTC
+GTCGCAGTTGCGTAGTTCCAAGAGTTTCCCTCCTCCGAACTCCCGAGCCCTCCCACCGGTCTCCCGTACC
+AGGTCTTGGTTGTCCAGTCTATTGAGACGTCTATCTCCTTGACTCCCTTCAGTACCTTCAAGGATATCTT
+CCTGGCGCTTTCCAAGAGTTTCTCAATAACTTCCATCCCTTGCTCCTCCACGTAATTCCTCACGGTCTGT
+GGGGACACGCCATACGCCCTCGACTTGCTTTCCACCGAATCGTTCCATAAACACGCTGAGATGAGGGTTC
+TCGCCACCTCTTCCCCTTTCTTTCCCTTGAAGTTCAGCATGGAAAGTAATTTATATCCTATTTGTTGAAT
+GTTATTTTGGTGAGGGAGTACCGGTGTTACCATCTCACTTACTCACGTGGTAATACCACATCTCCCTCAG
+CTTAAACCTTTCTTCAACTGAATTCTTAATACTCATATAAATCCTGTTATCTATCATGAATCGATATTAT
+TCTGTCAGAATTATTTTTCATAATACGATTTTGGGTCTACCGTATTAGGGCGTAAGCACTCCTATCCGAT
+TCCGGTCTTATAGACTGTTGTAGGATTTCCTTCCTTCTCTCCTCCTTAACGAATATCTGTGTTAAGGACA
+TTTGTGGGTCGAAGTCTATCAGCAATACTCTGTGGTTTACTGCTAAGCCCATTCCAAGAACTGCCGTTAG
+CGTAGTCTTACCTACACCGCCCTTGAAGTTATGTATAGCTATAACTTTACCGTTCATTTCACCACCCCGA
+ATTCCTCCTTTGGGTAAAGCCTCATGTTTCCTTTAACGAACTTGTAGAAGAGTTCCTCCAGCTGTTGTCT
+GTTTAAATGAGAAGATAGTAGGGGTTCTGCTACATTATGCCAGTTTATTGATAGGTTTTTGAAGGCTATC
+TGGAAGTTCCTCCAAACTTCTACCATGGTAAGAATGGCCTCTTCATCCAGTTTCTTCTCTTCATAGAGTT
+GTTTAATTTCTGGGCAATTGGATAACATCTCCTCCTTTAGTTTGGCTACAGTCTGTAACCATTTTTCATG
+GTTTATTCTGGTTATCTCTTCTGCAGGCGAGTGAACTTCAGTATTAAACTGGGGAGTTAACTGTTGTTTA
+GCCTCTTCCTCCTTCTGAGCCCATTCCTCTACGAAAGAATACTCATCACTTTCAGCCTCCTCTCCCTCAT
+CAGTTTCGACTTCCTCTCCTTCGTCTTCTTTCTCTTCTTTTACCTTGGATTTCTTCTTAGACCTTTGCAG
+TTTCTCTTCGGTCTTCAGCTTATTAATTGCTTGAGAAACTGCCATCCTATGGTTTACTATCTCCTCAAGT
+AGATCCTTCCTCTCATCCAAAATTATCTTTCTTCCATCGGTAAGTAATGTATTTCTTTCGTAAGGAGGTA
+ACTTAGCTACAGCTTCTAGTAAGCCCATTTCTTGTAGTTTAGTATAGATACTGTAGGCAGGATAGATTCC
+CAGTTTTCCTTTTAGTATATAATCGGTTAGCCATGGTGCATTTTCCTTAATCCTAATATAGTAGTCTAGT
+GCTCTATCATCAACCTTTACATTATACTTCTTTAGCTCTTCTTTTACTGCATTCCTTAAATCAGTGAGGC
+TTTGAATTTTTTTATTTTGACTTTCACTAAGTTGAACGGGTACCCGTTCAACTTTCGTCTCTTTAGGATT
+ATTTTCACTATTTTGGTTCTTTTTTAATATCTTAGTCTTCTCTTCTACTGCTTTCTCTATTAACGCTAGG
+GCTTGAGCTTTACTCAGTTGCCTCTGTGTTAAATTTGTAGATACTAATAGATCGTATTCATCAGCTCTGT
+CAGTCGTTTCATATACCGCAACTGGAACCTTTTTTATTCCTAATTCCTTAGCTATCTTCAGCCTAGTGTA
+TCCGTTAATTAACTCGTAGTTTTGATTAACGATAAGCGGTACCTTTATTCCATTTTTAGCTATATCTTCT
+TTGATTTTATCATACATGTTATTTTCAGGGATGAAGGTTCTGAATTCATCAACTTCCTTAATTTCTTCGA
+TAGAAATTTCTTTGTACTCTTTCAGCTTACTCATTGAACCACCTCAATCAATTTTCTAATTTTTTCAAGT
+TCTGTCGTTGCTAAATGTCTCCCTTTATCCGTTAAGACGTAATAGATTTCTTCACCTTCTTGTTCCTTTA
+TTACATATCCCTCTGCTAATAACCACCTAATATTCTGTATTACGGTCTGGTATGGGATTTGTGTACTTTC
+GGCTATTTCACTTGCTTTTGCCTTACCTACCTTTAGGAGGTAAATAACGATATATGCCCTGGGAGTTAGG
+AAGATGTATTTATCTGTGGATATTTTTCCCATGTTTGCTCTATGTTAATCATAGAGCATAATAATATTTA
+AATCTTCTCTTTACATATCGCATAAACCATAGATTACTCTTTTCATTGTATGTATAACATCAACCATATG
+AAAGAAAATTATCGCGTTCTCAGTGAGACCGAGCAGTATATCCTATTATATTTAATTAGTATAAAGGAAG
+GGGTGGCGGTAAAGGAAATTTATGAGGAAATGAAACTAAGTCCTAACGCTGTTACCCAAGCTGTTAATAA
+ACTATTAAATGAGGGACTTTTAACAGAGAAAAGGGAGGAAGTATTCCCTAGAAGAAGATTAATATATTTA
+AGTGAGAAAGGGAGGAAAATAGCTCAATTACTTCTTCAGATGCAGGAAATTATAAAGGTAAATCAATAGC
+GTGTTAAGTGGAAAGTATTAAAGTGAGAGTTGAAGAATATTAGATTAGTGAAAAGAGATGGCTAAAGTTG
+AGGAAGGAGAAATAATTCTAGATACTGAGGAGGAAGTTAACAACTTAATTGAGGCTATAAGGAAAGAGAA
+GGTTGATGAAGAATTAATTAAAAAAGCGTTATTGTTAAGCAAGAAAAGCCTTGTATCTAACCTCTAACAC
+GTTTTTATATAATGAGTAAAAGTAATTCGCACCTCCGCTCTTATCTTCATAAATTAGCTGGAAACCGAGT
+TTTTCATAAAATTCCTTAGCTGTCTTTGTATAAACTAAAATTCCTATACAACTATTATTAATACAATAGC
+CTAACGAATAGGGAATTATGAAATTCTTAACAAAAACACTCCCTACCCCTTTGCCTTGATATCTTTTATC
+TATACCTAGCTGTCCTAAAAGGATTACGGGTAGTTTCTTGAAACTTATATTGAACTCATGAGGTAAACCT
+CTTCTGTTAAACTCCTCCTTCATTACCTCCCTAATCTTACCTATAAAACCTTCAGCGAACGCATAAGAAT
+AACTGGAAAATGAAACAAAGCCCGCCAAATCATTATCACAAATTAGTAGAAAAGTATGGTTTATTCCAGC
+TAGATAATGCCCTACAGCAAGCCTTCTTATAAACTCGTTTTGTTCCTTCTCTCCACAATCAAAACTACCT
+AACCTATTTATGAAAGATGAGTGAATAGTATAAACATAACAATTGCCTAAAGGAGTAGAAATAGTATCGA
+AAGGTTGAATATTAGTACTCAACTCCTTATCGATATAAGATAGTCAATTCGACAGATAAAAATTACTTCC
+AATGCTATAACTTTGCCCTTATATTATGCTCTATTGTTTATGTAAAGCATAAAGTTTATATACTATCTAT
+GCTTTATGATTAACATAGAGCAAACATGATTTCCACACAAACCCCCAAAAATCCGATTAAAAGGTTAGAT
+GTTTTTTACGTATTATCTGAAGGTGTAGTAGTAGCTGGAGACGTAGAGAGTAAGAGTAGGAAGGGATTAT
+TGCATTATACTAGGATTGTTCTGGATCCTCTAACAATGAAGATTACTAAGGCTTCCTGCGACTGCGAGGG
+TTATACTTTCAGGCACAATTGCTGGCACATCAAGACTTTAGAGCAGATGATTAAGGAGGACAGGGAGTTA
+AGGGAAAGGATAGAGAAGGCAAGGCAGGAAATGATGCAAATAGAAGAAGACATAGCAAGCTGGGGATGAG
+CTATGAGTGAGGTACTGCAGACTCAGAGAAACTTAGAAGAGTTAGTAAAGCTATTGAGGATATACTTTCA
+ACTTGATGAGATTCTCAGTTTCGCAATGGAAGAGTTAGGAGGCGATGAAATAGTAGTTGAAATATCAGCA
+GTTAAGGACAGAGTTAGAAAAGTGATTGAGAGAATGATAAGTTAGAATTTTTCTTATTAAACTAGGGAGT
+TTATTCTAATTTTTCTAACTATTTGTGCTACATGGGTTTTTAAAACGGCTCTTTTTGAGAGCATGAGTTT
+CCTTAACTTATTCAAAAAACCAAGTCAGCAAGCAGTAAAGAAGGATAAAACTAAATACTACAAGCTGGAA
+GGGATCCCGTTCTTCCTTCTAGCGCCAGAAGATAGAGATATGAAAATGAAGGAATTAAGTGCTCTTTTAA
+GTCAAGCTGAAAAGGGCTATATTTACATCAGTCGTAAGCCAGATACCTACGAGTTTGAGGGGACTAAGTT
+CCCTATTATTACGTCTTCTTTCAATTTGATAACAGAGAAAGAACTAGACTTAGAGACAGCCGAACCTCCG
+CAGAGGCCTAAGATTGTTAAAGAATATGCAAAATATTTACAAACTACAGAGGGTTACGCTAGAGTTCTGG
+TTAGTTATGCATACTCGACTAAAATTTACGAAGGTGCGCTTGGCAGAATAGACTTCAAATCTTTACGCCC
+TGAGCTCTTTGAGTTAGTTGTTCAGTTCCAGAAAATTTCACCACTTTCTGTAAGAAATTACCTCAACAGC
+CTAGAAGTGAAGAAACAGAAGATGGCCAGGTATGCCTCTTCATCAGTTCAAGTTGAGGAAATGTTGGTAA
+GAGGGGCTCAATTGAAGAAAGACCTTGATGAGGAGGCTGCAGATCCCCTCAAGTTCAGATTCGTATTCAT
+TATACACAGTAAGACAGTTCAAGAACTTGAATCTTTGACAAGAGAACTCACTCAAACTGCCCAGGAAAAT
+GGTATACTATTAGATGTTCCTTGTTGTGCTCAAAAGGAGTTATATAGTTTTGAAGGGAGCGTAGGTTACA
+GAATAAGCAGTAACATCAGTCTTAGCAAGTTCTATCCGATCATAGGTTTTAGTCTAATTGAGCCTGGCGG
+GATATTTCTAGGTACCGATGACAAAGGTGCTCCAATTGCTATCAATCCCTACTTGTCGGTCAACGGGCGC
+CAGAACCCACATTGGGCCATCACTGGTACAACCGGTGCAGGTAAAACAACAACTGGCGCTGTTCTCATTG
+ATAGACTGAGAAAAGCTCACGACGATGTTTACGTAATAGTCATAGACCCTATGAGTAACTATAACAGATT
+CTTTGAAAATGAAGCAGATCTTAACATCGTTTTCGGAGATAATGATTATTTAGGATTGGATCCTGTTAGT
+TTAGCTAACGAAGGAGTAGTAAGCTCTGGTGACATTGCTGATTTCTTAATAGAATCATATGGAATTCCAG
+CTGAGCTTCGAGGCATTTTAGTAAGCCAGCTCGAGCAAAATAAATCGTTAAAAGAGCTCATGGACAATTT
+AGAAGACTTAGCAAGCAAGAAATTTGCTACTGAATACAGAAAATTAGAGAACTTCCTATTGAATATGACA
+ACGGGTTCTGATAAGTATGTCTTTCAAGGATCTCCGCCTAGTCTAAAGAATAAGAAATTCGTCATTTTGG
+GATTGAAAACTGAGGACACTAGGAAGAAGCGTTTGGCAGCAACTATGCTAATGCTTTATGCATATTCACT
+AATTAATAAACTCCCCAAGGATGTCGAGAAATTAATCCTCATCGACGAAGCCCACTTCCTCTTCGAGTAT
+CAGTCAGTAGCTAAGATCATTGCGATCATTTACCGAACAGCCAGGGCTTTACGGACTTCAATGATCACTA
+TGACACAACTGATACAACATTATAATATGAACAACTATAGTAGAGAAGCCTGGCAATTGGCTAACAACAA
+ACTAATATTAAAACAAGAGAAGGAGGCAAAAGACGACCTAGTTAATTTAGCTCATCTTTCTGAAGAAGAG
+ATTGACTATATCCTGAAATCTTCACGTGGAAGGGGAATTCTGAGGACTGGCGCAATTACTACACACATTC
+AAATCCAACTCACTGACGAAGAAAAAGAACATTGGAGGACTGAGTGAAATGAGCTTAGTTCAGCTCATTG
+AAAAAGCTGCGAAGAAATATAATATCAAAATAAATTCTCTCCCTAATGGTGTGATAATTCTTGTAAAAAA
+TGACATAGGCTATGTGCAAATAGCTGCAGTTAGAAATGTTTACTATGTCAGATACTTAACGAAAAATGAA
+GCGTATATTATACGTAACTTAAACGAAAAGATCATAGAGCTTATACTGGAAGAAAAGTTAGAAGAAACTG
+AAGCTATCAAAATCCCTGATGTTTAATAAAAGTAAAGTTCTTTCAATTTCTTTCATTCTCTCTTCTTCAA
+ATAATTTTTCTTTCAATTTCTGGTCAGATAAATACTTTAGTAATATCTTCTTTCTCGTCTCAGCTTTTCC
+ATACATAATCCCTTTCTTTTTCAACAACTCATATATTCTCAATGCCTCTTCCTTGTCACCACTATATTCA
+TATATATAATGTATAATAGGATCCTCCCTAACCACGTGCCTCAGAAGTTTCTTCTTCTGCCTAATCGCGT
+GTCTGCCTAGTCCTTTCATTTTTAAGAATTTGATATAGTCTCTGGTTACCACTTTTCCTTCTCTTTCTAG
+AATATATTCGTAAATCGCTAAGTAAAAAGACGCGTCCAATTTTTTCTCATCAATCTTTTGCAAAATTTTA
+TAGAACATCTCTTTCTCTTTTTCTGTCATAACGCTCTGAAGATAATTCAGTACTATTTTCTTCATATCTT
+TGATTTCTTTCTCAGTTTCTCTCTTTTGAGAACTTGCTCTTTCGTAATACTCTAGATTTGAATAATCTTG
+ATATGTATAATTATCAAAGTCTACTACTTCTCCCGTACACGAGTCCACCAGAAACCCTTCGCTGTTCCTT
+ACTTTGTAGCACTCTTGCATCAGAAAATAGAAGTATTTTAAAAGCCTGTAAGGATTTTGATGGGGAAATC
+AGTATTACCAGTAAACTCCCCAGTTTACTAAGAAAAAAGACTTAACTTACCCAAACTGTCCCGTTCCAGA
+TCGCTATTATTTCTGTTTTGACTGCTGCAGTGTATTGAAATGTAGCATAGAATATGTTAGGTATGTAATT
+CGCTGACGTGAAGCATAGAGTTTCATGTAAATATGGAATATGTTGTCCAGTAGTATTAAGATAGAAGTAA
+GTCGTCTCATTGTTAAGTGGATTAAAATAGTAGTATATGTTGCCAAACGGGACTTTATTGAACCCACTGT
+AATATAATGCATTGTAAATATCGACAAGATATATTTCATAATTTCCAGTGATATTCATAAATATTGTATT
+ATTGTAAATCTGTGGGATTCTGCTTATGTTAAAGAACATTATCTGATAGTTGAAATATTGCAATTTAGGC
+CATGCAGACAAATTTAGGATATTAGCAGTTACTAAGCTCCAGTTCTCGTAGAAAGATTCAAGCTCTAGAA
+GATTAGTAAAAACAGAAGATGTAGTATTGAAAGTATACATAACAAATTGTGATGCGAGAACGAAATACTC
+AAACTTCCAATATTGAAAGTCTGTTTTATTAATTGTTTTCATGATATAATTATACAATGTGTGTGCTAAC
+GTAGCGTTTTGCTCTAAATAGAACCACGAAATCGCTGCAGACTTGCTATAAATCATTTTTTGAGAGATCC
+AGTAAGGAGGCTGTACTGTATTATCCTGAACGTTGAAAGTAAGATAGTAGTTTATTGTGTTCCAGTCTTG
+TTGTGTGTTTAATAGTGGAATAATTTCTATATTACCAGCGTGCCAAATTCTTTCAATAGTATAATTTGCT
+ATCTGTATGTGATCGTAAGTAACTATCGTAGTACTATTCGCAATCGGATCTGAGCTCCACGTAGTATACG
+TAAAGTAAGCTGTAATATTTCTAGAATTGTAGATTTTATTATTAATAAGTGTCTGTGGATCTGAACCGTT
+GTAGACTATTACCATTATTGGTAATGTCACGTTATACTCATACCAGTTGAAATTATAACTTGTAGTAGAT
+AAATAAGGCCCTGTAGGGTAGTATATATAATAAATATATGTTGTATTATTAACAGTACGTTGATAATGTT
+TATATCCAGCTCCAGCACTTATACTATAGCTTCCATAAACTTCTTGTGTACTTTCTGGAGGTACTGTAAT
+CGTTCCATAGATGTAATTAGGCCCATATTCCCCTCCATACCAATAGAAAGTTGTCGCGAAACTCTGAGAA
+TTTATCAGCTGATTATTTGCATACAGATAGGCTGTACCCCAAACTTTCATCGCGTAATACTCATAAACAT
+AAGTAACGTTACCTTGATTGTGCGTATATTTATTATATAAATATGTATATTCGTTATATTGAACGTTTAC
+GCTAGTTTTTACAGAAGTTTCATTAATTATTTTGTAAACTGGGGGGTTTACTGAAATTAGATCTGACGGA
+GGATAGCTCCAGCCAGACTGAAATCCATTAGGCGCCTCGAGTGTTTTCCCATATTTTACTATTATATCCC
+ATTTTGAATAGTTTTCTGTATCATTTTCATTTAATGGGAACGGCTGGAGTGAAGTATTCTTATAATTGGT
+AATATTGACATAGGCACTGCTAGCTATAGATAATAGAGCACCGTATGGCCCTGGAGCAATTTCACTTGCG
+TTTCTAGCCAATGCATCAAATAAGAGATTTAACATATTGTTGTCAGGCTTTGAGAAGTTGAATAAGATAT
+ATGCTTCTGGAGAAATATTGTAATAAGGTGCTGGTAGATTACTGTAGCTTCCCCTAACATATTGTAGATC
+TTGTAACGAAGGGCTTAATGTTACTGTTTTATTATAAATGTACTTAGGCCCTGGGACGCTGTAAGACCCA
+GAACTTCCTCCTCCACTTCCTATTTGTATTGAAGAATTCTGTTGAGGTACTTTTAGATTTGCAAAACTCG
+CTATAAATGCCAGAATTATTATTATTGCTATAAATAAAACAGAGAATCTTCTAATATCCATTCCGAATAT
+ATTATCTCCCATTTTCACTTCCCTACCTTTAGGGG
diff -r 000000000000 -r debe9c750cdd test-data/TEST_1/test_1.fna.gff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEST_1/test_1.fna.gff	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,7 @@
+##gff-version 3
+gi|228288719|ref|NC_012624.1|	ISEScan	insertion_sequence	30355	31343	.	+	.	ID=gi|228288719|ref|NC_012624.1|_IS_1;family=IS5;cluster=IS5_222
+gi|228288719|ref|NC_012624.1|	ISEScan	terminal_inverted_repeat	30355	30382	.	+	.	ID=gi|228288719|ref|NC_012624.1|_IS_1_TIR;parent=gi|228288719|ref|NC_012624.1|_IS_1
+gi|228288719|ref|NC_012624.1|	ISEScan	terminal_inverted_repeat	31316	31343	.	+	.	ID=gi|228288719|ref|NC_012624.1|_IS_1_TIR;parent=gi|228288719|ref|NC_012624.1|_IS_1
+gi|228288719|ref|NC_012624.1|	ISEScan	insertion_sequence	32413	33650	.	-	.	ID=gi|228288719|ref|NC_012624.1|_IS_2;family=ISH3;cluster=ISH3_198|ISH3||gi|15898236|ref|NP_342841
+gi|228288719|ref|NC_012624.1|	ISEScan	terminal_inverted_repeat	32413	32456	.	-	.	ID=gi|228288719|ref|NC_012624.1|_IS_2_TIR;parent=gi|228288719|ref|NC_012624.1|_IS_2
+gi|228288719|ref|NC_012624.1|	ISEScan	terminal_inverted_repeat	33607	33650	.	-	.	ID=gi|228288719|ref|NC_012624.1|_IS_2_TIR;parent=gi|228288719|ref|NC_012624.1|_IS_2
diff -r 000000000000 -r debe9c750cdd test-data/TEST_1/test_1.fna.is.fna
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEST_1/test_1.fna.is.fna	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,40 @@
+>gi|228288719|ref|NC_012624.1|_30355_31343_+ IS5_222
+AGAATTATACAAAAATTTATAAATAATTATACCGAGTATTACTCATGGGAAAGAGTAAGT
+ACAAGAGGGATTGGAGCAAGTACGACGAGAACGTTATAACTAGATACGAGCTAATGTTCC
+CCTTCTACGTCTTCCAACACTGGTGGGAATTACTAGCAGAAGAGAATAGGAATGCCAAGA
+AAACCTACAAGGCGCCAAAGGAGTTCAACGACTTCCTAGCGTTCCTGCACTTGTTCCTAC
+CTTATAGGGCCATAGAAGGAGTATTGAGAGCATTAGAAAGACTGAAAATCATCCCAACAA
+GCCTAGACTACTCAACAATATGGGAAAGAGTAAGAAACATGAACATAAAATTCCCAGAGG
+CAAATGACCAACTTGAAGTAATAGCAGACGCAACGGGAATAAGCACAAACAAGGGAGGAC
+AATACATTATAGCAAAATGGGGAAAAACCAAGGACTCAAAATTCCTCAAGATCGAAATAG
+TAATGGATAAGGACCAATTCAACGTAATAAACGCTGAAGTAACCAGCAACGAGGTTCAGA
+CTGCAGTTAAGACGGTTAAGGATTTACAAGATAAGGGAAAGAAGGTCAAGAAGTTTTATG
+GAGATAAAGCTTATGATGCTAATGAGGTTTACAAGACTGGGGTTGAGGTTGTTGTTCCAC
+CTAGGGAGAACGCCTCCACTAGACGCGGTCATCCTGCTAGGAGAAAGGCTGTAAGGGAGT
+TCAAGAGGTTGGGTTATAATCGTTGGAGGGAGGAGAGGGGTTACGGTGTTAGGTGGAGGA
+TTGAGTCCTTATTCTCTGCTGTGAAGCGTACTTTTGGGGAATCTGTTAGGGCTACAAGTT
+TTTTAGGACAAGTGGTTGAGGCTAAGCTCAAGTTCTGGGCTTATGCATGGATGGTCCACT
+TGGCTAATTCTTTAGTTGGTAGAGCTCCGGGTATTAGGGTGTGAGCTTGCGAATAACGTT
+GAAATAAATATTAATTACTGAAAAATTCT
+>gi|228288719|ref|NC_012624.1|_32413_33650_- ISH3_198|ISH3||gi|15898236|ref|NP_342841
+CCCTAATACGGTAGACCCAAAATCGTATTATGAAAAATAATTCTGACAGAATAATATCGA
+TTCATGATAGATAACAGGATTTATATGAGTATTAAGAATTCAGTTGAAGAAAGGTTTAAG
+CTGAGGGAGATGTGGTATTACCACGTGAGTAAGTGAGATGGTAACACCGGTACTCCCTCA
+CCAAAATAACATTCAACAAATAGGATATAAATTACTTTCCATGCTGAACTTCAAGGGAAA
+GAAAGGGGAAGAGGTGGCGAGAACCCTCATCTCAGCGTGTTTATGGAACGATTCGGTGGA
+AAGCAAGTCGAGGGCGTATGGCGTGTCCCCACAGACCGTGAGGAATTACGTGGAGGAGCA
+AGGGATGGAAGTTATTGAGAAACTCTTGGAAAGCGCCAGGAAGATATCCTTGAAGGTACT
+GAAGGGAGTCAAGGAGATAGACGTCTCAATAGACTGGACAACCAAGACCTGGTACGGGAG
+ACCGGTGGGAGGGCTCGGGAGTTCGGAGGAGGGAAACTCTTGGAACTACGCAACTGCGAC
+GACAAAGTTTAATGGGAAAGTGCTCCTACTGGCCTTCGTCACTCAAGTCAAGGGGATGAC
+TAAGGAAGAGATCGTGAAGGCCCTCGTGGAGCAAGTCGTCGCGATGGGGTTCAAGATAAG
+GTTGATAACTCTTGACGCAGGTTTCTATACTGTTGATGTGCTCAACTTCATTTCACAGTT
+TAAGTATATAGTTGCTGTGCCTGTTGGGGATGTTAAGGTTTATGAGGAGTTTGACGGGGA
+TTACGCAACTAATAGTAAGAGGCATAGGAGGGATGAGCAGGTCAAGTTCAGGCTTCTCGT
+GTACAGCAAGGAAAAAGTGAGGAGAAAGAAGAAGAGTGTTGTTTATTTTGCTAGGGCTAC
+TAATCTAGACCTACCGAAGGGGGAGGTGTTGGATTTGTACAATAAGGTAAGGGGTCCCAT
+AGAGACCTCTTATAGGAACATTAAGGCTTTTCTTCCATTTACTAGTTCTACTAAGTTTGT
+TTTCCGCACGTTGATCTTCGTGCTGGCCGTGGCCTTCTACTCCCTGTACACCGTGTTCAA
+GGGGGAGGTGAGGAGGGAGCAGTTCAGGATACTCCTAATACTCTTGTTTTCTGATGATTT
+ATTCTATCTAAAAGATTTTCTATTTAAATCAATAGAACCGCTTATTAATAATATAGATTT
+ATTTTCAAGGAGGTGATTTTGGGTCTACCGAATAAGGG
diff -r 000000000000 -r debe9c750cdd test-data/TEST_1/test_1.fna.orf.faa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEST_1/test_1.fna.orf.faa	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,13 @@
+>gi|228288719|ref|NC_012624.1|_30399_31298_+
+MGKSKYKRDWSKYDENVITRYELMFPFYVFQHWWELLAEENRNAKKTYKAPKEFNDFLAF
+LHLFLPYRAIEGVLRALERLKIIPTSLDYSTIWERVRNMNIKFPEANDQLEVIADATGIS
+TNKGGQYIIAKWGKTKDSKFLKIEIVMDKDQFNVINAEVTSNEVQTAVKTVKDLQDKGKK
+VKKFYGDKAYDANEVYKTGVEVVVPPRENASTRRGHPARRKAVREFKRLGYNRWREERGY
+GVRWRIESLFSAVKRTFGESVRATSFLGQVVEAKLKFWAYAWMVHLANSLVGRAPGIRV
+>gi|228288719|ref|NC_012624.1|_32517_33587_-
+MIDNRIYMSIKNSVEERFKLREMWYYHVRSEMVTPVLPHQNNIQQIGYKLLSMLNFKGKK
+GEEVARTLISACLWNDSVESKSRAYGVSPQTVRNYVEEQGMEVIEKLLESARKISLKVLK
+GVKEIDVSIDWTTKTWYGRPVGGLGSSEEGNSWNYATATTKFNGKVLLLAFVTQVKGMTK
+EEIVKALVEQVVAMGFKIRLITLDAGFYTVDVLNFISQFKYIVAVPVGDVKVYEEFDGDY
+ATNSKRHRRDXAGQVQASRVQQGKSEEKEEDVVYFARATNLDLPKGEVLDLYNKVRGPIE
+TSYRNIKAFLPFTSSTKFVXPHVDLRAGRGLLLPVHRVQGGGEEGAVQDTPNTLVF
diff -r 000000000000 -r debe9c750cdd test-data/TEST_1/test_1.fna.orf.fna
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEST_1/test_1.fna.orf.fna	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,35 @@
+>gi|228288719|ref|NC_012624.1|_30399_31298_+
+ATGGGAAAGAGTAAGTACAAGAGGGATTGGAGCAAGTACGACGAGAACGTTATAACTAGA
+TACGAGCTAATGTTCCCCTTCTACGTCTTCCAACACTGGTGGGAATTACTAGCAGAAGAG
+AATAGGAATGCCAAGAAAACCTACAAGGCGCCAAAGGAGTTCAACGACTTCCTAGCGTTC
+CTGCACTTGTTCCTACCTTATAGGGCCATAGAAGGAGTATTGAGAGCATTAGAAAGACTG
+AAAATCATCCCAACAAGCCTAGACTACTCAACAATATGGGAAAGAGTAAGAAACATGAAC
+ATAAAATTCCCAGAGGCAAATGACCAACTTGAAGTAATAGCAGACGCAACGGGAATAAGC
+ACAAACAAGGGAGGACAATACATTATAGCAAAATGGGGAAAAACCAAGGACTCAAAATTC
+CTCAAGATCGAAATAGTAATGGATAAGGACCAATTCAACGTAATAAACGCTGAAGTAACC
+AGCAACGAGGTTCAGACTGCAGTTAAGACGGTTAAGGATTTACAAGATAAGGGAAAGAAG
+GTCAAGAAGTTTTATGGAGATAAAGCTTATGATGCTAATGAGGTTTACAAGACTGGGGTT
+GAGGTTGTTGTTCCACCTAGGGAGAACGCCTCCACTAGACGCGGTCATCCTGCTAGGAGA
+AAGGCTGTAAGGGAGTTCAAGAGGTTGGGTTATAATCGTTGGAGGGAGGAGAGGGGTTAC
+GGTGTTAGGTGGAGGATTGAGTCCTTATTCTCTGCTGTGAAGCGTACTTTTGGGGAATCT
+GTTAGGGCTACAAGTTTTTTAGGACAAGTGGTTGAGGCTAAGCTCAAGTTCTGGGCTTAT
+GCATGGATGGTCCACTTGGCTAATTCTTTAGTTGGTAGAGCTCCGGGTATTAGGGTGTGA
+>gi|228288719|ref|NC_012624.1|_32517_33587_-
+ATGATAGATAACAGGATTTATATGAGTATTAAGAATTCAGTTGAAGAAAGGTTTAAGCTG
+AGGGAGATGTGGTATTACCACGTGAGTAAGTGAGATGGTAACACCGGTACTCCCTCACCA
+AAATAACATTCAACAAATAGGATATAAATTACTTTCCATGCTGAACTTCAAGGGAAAGAA
+AGGGGAAGAGGTGGCGAGAACCCTCATCTCAGCGTGTTTATGGAACGATTCGGTGGAAAG
+CAAGTCGAGGGCGTATGGCGTGTCCCCACAGACCGTGAGGAATTACGTGGAGGAGCAAGG
+GATGGAAGTTATTGAGAAACTCTTGGAAAGCGCCAGGAAGATATCCTTGAAGGTACTGAA
+GGGAGTCAAGGAGATAGACGTCTCAATAGACTGGACAACCAAGACCTGGTACGGGAGACC
+GGTGGGAGGGCTCGGGAGTTCGGAGGAGGGAAACTCTTGGAACTACGCAACTGCGACGAC
+AAAGTTTAATGGGAAAGTGCTCCTACTGGCCTTCGTCACTCAAGTCAAGGGGATGACTAA
+GGAAGAGATCGTGAAGGCCCTCGTGGAGCAAGTCGTCGCGATGGGGTTCAAGATAAGGTT
+GATAACTCTTGACGCAGGTTTCTATACTGTTGATGTGCTCAACTTCATTTCACAGTTTAA
+GTATATAGTTGCTGTGCCTGTTGGGGATGTTAAGGTTTATGAGGAGTTTGACGGGGATTA
+CGCAACTAATAGTAAGAGGCATAGGAGGGATGAGCAGGTCAAGTTCAGGCTTCTCGTGTA
+CAGCAAGGAAAAAGTGAGGAGAAAGAAGAAGAGTGTTGTTTATTTTGCTAGGGCTACTAA
+TCTAGACCTACCGAAGGGGGAGGTGTTGGATTTGTACAATAAGGTAAGGGGTCCCATAGA
+GACCTCTTATAGGAACATTAAGGCTTTTCTTCCATTTACTAGTTCTACTAAGTTTGTTTT
+CCGCACGTTGATCTTCGTGCTGGCCGTGGCCTTCTACTCCCTGTACACCGTGTTCAAGGG
+GGAGGTGAGGAGGGAGCAGTTCAGGATACTCCTAATACTCTTGTTTTCTGA
diff -r 000000000000 -r debe9c750cdd test-data/TEST_1/test_1.fna.sum
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEST_1/test_1.fna.sum	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,4 @@
+# seqid                                                      family         nIS %Genome          bps4IS          dnaLen
+gi|228288719|ref|NC_012624.1|                                IS5              1    2.34             989           42245
+gi|228288719|ref|NC_012624.1|                                ISH3             1    2.93            1238           42245
+input                                                        total            2    5.27            2227           42245
diff -r 000000000000 -r debe9c750cdd test-data/TEST_1/test_1.fna.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEST_1/test_1.fna.tsv	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,3 @@
+seqID	family	cluster	isBegin	isEnd	isLen	ncopy4is	start1	end1	start2	end2	score	irId	irLen	nGaps	orfBegin	orfEnd	strand	orfLen	E-value	E-value4copy	type	ov	tir
+gi|228288719|ref|NC_012624.1|	IS5	IS5_222	30355	31343	989	1	30355	30382	31316	31343	24	20	28	0	30399	31298	+	900	1.7e-37	1.7e-37	p	1	AGAATTATACAAAAATTTATAAATAATT:AGAATTTTTCAGTAATTAATATTTATTT
+gi|228288719|ref|NC_012624.1|	ISH3	ISH3_198|ISH3||gi|15898236|ref|NP_342841	32413	33650	1238	1	32413	32456	33607	33650	48	34	44	0	32517	33587	-	1071	2.3e-147	2.3e-147	c	1	CCCTTATTCGGTAGACCCAAAATCACCTCCTTGAAAATAAATCT:CCCTAATACGGTAGACCCAAAATCGTATTATGAAAAATAATTCT
diff -r 000000000000 -r debe9c750cdd test-data/TEST_1/test_1.log
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEST_1/test_1.log	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,43 @@
+/usr/local/bin/FragGeneScan -s input -o results/proteome/input -w 0 -t illumina_5 -p 1
+Using 1 threads.
+no. of seqs: 1
+Clock time used (by 1 threads) = 0.00 mins
+prepare gff file..
+Time elapsed: 0 hours 0 minutes and 0 seconds.
+ISEScan starts at Wed Aug 31 15:18:46 2022
+predict and translate genes from genome sequence into protein database using FragGeneScan program
+
+Begin to translate genome into proteome.
+Translating genome into proteome for input , return  0
+
+Finish translating genome into proteome. Wed Aug 31 15:18:46 2022
+
+Begin to phmmer search against proteome database. Wed Aug 31 15:18:46 2022
+Finish phmmer searching /usr/local/bin/pHMMs/clusters.single.faa  against results/proteome/input.faa , output results/hmm/clusters.single.faa.input.faa
+
+Finish phmmer searching against proteome database. Wed Aug 31 15:19:05 2022
+
+Begin to profile HMM search against proteome database. Wed Aug 31 15:19:05 2022
+Finish Profile HMM searching /usr/local/bin/pHMMs/clusters.faa.hmm  against results/proteome/input.faa , output results/hmm/clusters.faa.hmm.input.faa
+
+Finish profile HMM searching against proteome database. Wed Aug 31 15:19:17 2022
+pred begins at Wed Aug 31 15:19:17 2022
+Begin addNonORFcopy at Wed Aug 31 15:19:18 2022
+Finish addNonORFcopy at Wed Aug 31 15:19:18 2022
+Begin addNonORFcopy1 at Wed Aug 31 15:19:18 2022
+Finish addNonORFcopy1 at Wed Aug 31 15:19:18 2022
+getFullIS() begins at Wed Aug 31 15:19:18 2022
+Start typing IS elements
+The single-copy partial IS element with evalue > 1e-50: isLen=989 IS5 bd=[30355, 31343] orf('gi|228288719|ref|NC_012624.1|', 30399, 31298, '+') evalue=1.7e-37
+Finish typing partial IS elements
+Begin removeOverlappedHits at Wed Aug 31 15:19:18 2022
+gi|228288719|ref|NC_012624.1|: no intersected hits found
+Finish removeOverlappedHits at Wed Aug 31 15:19:18 2022
+Begin reading protein database at Wed Aug 31 15:19:18 2022
+Finish reading protein database at Wed Aug 31 15:19:18 2022
+Write IS elements from all sequences in input into one result file under results
+Write 2 IS copies to results/input.csv and results/input.tsv and results/input.raw
+Write summarized result to results/input.sum
+End in pred Wed Aug 31 15:19:18 2022
+Both complete and partial IS elements are reported.
+ISEScan ends at Wed Aug 31 15:19:18 2022
diff -r 000000000000 -r debe9c750cdd test-data/test_2.fna.gff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_2.fna.gff	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,4 @@
+##gff-version 3
+gi|228288719|ref|NC_012624.1|	ISEScan	insertion_sequence	32413	33650	.	-	.	ID=gi|228288719|ref|NC_012624.1|_IS_1;family=ISH3;cluster=ISH3_198|ISH3||gi|15898236|ref|NP_342841
+gi|228288719|ref|NC_012624.1|	ISEScan	terminal_inverted_repeat	32413	32456	.	-	.	ID=gi|228288719|ref|NC_012624.1|_IS_1_TIR;parent=gi|228288719|ref|NC_012624.1|_IS_1
+gi|228288719|ref|NC_012624.1|	ISEScan	terminal_inverted_repeat	33607	33650	.	-	.	ID=gi|228288719|ref|NC_012624.1|_IS_1_TIR;parent=gi|228288719|ref|NC_012624.1|_IS_1
diff -r 000000000000 -r debe9c750cdd test-data/test_2.fna.is.fna
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_2.fna.is.fna	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,22 @@
+>gi|228288719|ref|NC_012624.1|_32413_33650_- ISH3_198|ISH3||gi|15898236|ref|NP_342841
+CCCTAATACGGTAGACCCAAAATCGTATTATGAAAAATAATTCTGACAGAATAATATCGA
+TTCATGATAGATAACAGGATTTATATGAGTATTAAGAATTCAGTTGAAGAAAGGTTTAAG
+CTGAGGGAGATGTGGTATTACCACGTGAGTAAGTGAGATGGTAACACCGGTACTCCCTCA
+CCAAAATAACATTCAACAAATAGGATATAAATTACTTTCCATGCTGAACTTCAAGGGAAA
+GAAAGGGGAAGAGGTGGCGAGAACCCTCATCTCAGCGTGTTTATGGAACGATTCGGTGGA
+AAGCAAGTCGAGGGCGTATGGCGTGTCCCCACAGACCGTGAGGAATTACGTGGAGGAGCA
+AGGGATGGAAGTTATTGAGAAACTCTTGGAAAGCGCCAGGAAGATATCCTTGAAGGTACT
+GAAGGGAGTCAAGGAGATAGACGTCTCAATAGACTGGACAACCAAGACCTGGTACGGGAG
+ACCGGTGGGAGGGCTCGGGAGTTCGGAGGAGGGAAACTCTTGGAACTACGCAACTGCGAC
+GACAAAGTTTAATGGGAAAGTGCTCCTACTGGCCTTCGTCACTCAAGTCAAGGGGATGAC
+TAAGGAAGAGATCGTGAAGGCCCTCGTGGAGCAAGTCGTCGCGATGGGGTTCAAGATAAG
+GTTGATAACTCTTGACGCAGGTTTCTATACTGTTGATGTGCTCAACTTCATTTCACAGTT
+TAAGTATATAGTTGCTGTGCCTGTTGGGGATGTTAAGGTTTATGAGGAGTTTGACGGGGA
+TTACGCAACTAATAGTAAGAGGCATAGGAGGGATGAGCAGGTCAAGTTCAGGCTTCTCGT
+GTACAGCAAGGAAAAAGTGAGGAGAAAGAAGAAGAGTGTTGTTTATTTTGCTAGGGCTAC
+TAATCTAGACCTACCGAAGGGGGAGGTGTTGGATTTGTACAATAAGGTAAGGGGTCCCAT
+AGAGACCTCTTATAGGAACATTAAGGCTTTTCTTCCATTTACTAGTTCTACTAAGTTTGT
+TTTCCGCACGTTGATCTTCGTGCTGGCCGTGGCCTTCTACTCCCTGTACACCGTGTTCAA
+GGGGGAGGTGAGGAGGGAGCAGTTCAGGATACTCCTAATACTCTTGTTTTCTGATGATTT
+ATTCTATCTAAAAGATTTTCTATTTAAATCAATAGAACCGCTTATTAATAATATAGATTT
+ATTTTCAAGGAGGTGATTTTGGGTCTACCGAATAAGGG
diff -r 000000000000 -r debe9c750cdd test-data/test_2.fna.orf.faa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_2.fna.orf.faa	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,7 @@
+>gi|228288719|ref|NC_012624.1|_32517_33587_-
+MIDNRIYMSIKNSVEERFKLREMWYYHVRSEMVTPVLPHQNNIQQIGYKLLSMLNFKGKK
+GEEVARTLISACLWNDSVESKSRAYGVSPQTVRNYVEEQGMEVIEKLLESARKISLKVLK
+GVKEIDVSIDWTTKTWYGRPVGGLGSSEEGNSWNYATATTKFNGKVLLLAFVTQVKGMTK
+EEIVKALVEQVVAMGFKIRLITLDAGFYTVDVLNFISQFKYIVAVPVGDVKVYEEFDGDY
+ATNSKRHRRDXAGQVQASRVQQGKSEEKEEDVVYFARATNLDLPKGEVLDLYNKVRGPIE
+TSYRNIKAFLPFTSSTKFVXPHVDLRAGRGLLLPVHRVQGGGEEGAVQDTPNTLVF
diff -r 000000000000 -r debe9c750cdd test-data/test_2.fna.orf.fna
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_2.fna.orf.fna	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,19 @@
+>gi|228288719|ref|NC_012624.1|_32517_33587_-
+ATGATAGATAACAGGATTTATATGAGTATTAAGAATTCAGTTGAAGAAAGGTTTAAGCTG
+AGGGAGATGTGGTATTACCACGTGAGTAAGTGAGATGGTAACACCGGTACTCCCTCACCA
+AAATAACATTCAACAAATAGGATATAAATTACTTTCCATGCTGAACTTCAAGGGAAAGAA
+AGGGGAAGAGGTGGCGAGAACCCTCATCTCAGCGTGTTTATGGAACGATTCGGTGGAAAG
+CAAGTCGAGGGCGTATGGCGTGTCCCCACAGACCGTGAGGAATTACGTGGAGGAGCAAGG
+GATGGAAGTTATTGAGAAACTCTTGGAAAGCGCCAGGAAGATATCCTTGAAGGTACTGAA
+GGGAGTCAAGGAGATAGACGTCTCAATAGACTGGACAACCAAGACCTGGTACGGGAGACC
+GGTGGGAGGGCTCGGGAGTTCGGAGGAGGGAAACTCTTGGAACTACGCAACTGCGACGAC
+AAAGTTTAATGGGAAAGTGCTCCTACTGGCCTTCGTCACTCAAGTCAAGGGGATGACTAA
+GGAAGAGATCGTGAAGGCCCTCGTGGAGCAAGTCGTCGCGATGGGGTTCAAGATAAGGTT
+GATAACTCTTGACGCAGGTTTCTATACTGTTGATGTGCTCAACTTCATTTCACAGTTTAA
+GTATATAGTTGCTGTGCCTGTTGGGGATGTTAAGGTTTATGAGGAGTTTGACGGGGATTA
+CGCAACTAATAGTAAGAGGCATAGGAGGGATGAGCAGGTCAAGTTCAGGCTTCTCGTGTA
+CAGCAAGGAAAAAGTGAGGAGAAAGAAGAAGAGTGTTGTTTATTTTGCTAGGGCTACTAA
+TCTAGACCTACCGAAGGGGGAGGTGTTGGATTTGTACAATAAGGTAAGGGGTCCCATAGA
+GACCTCTTATAGGAACATTAAGGCTTTTCTTCCATTTACTAGTTCTACTAAGTTTGTTTT
+CCGCACGTTGATCTTCGTGCTGGCCGTGGCCTTCTACTCCCTGTACACCGTGTTCAAGGG
+GGAGGTGAGGAGGGAGCAGTTCAGGATACTCCTAATACTCTTGTTTTCTGA
diff -r 000000000000 -r debe9c750cdd test-data/test_2.fna.sum
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_2.fna.sum	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,3 @@
+# seqid                                                      family         nIS %Genome          bps4IS          dnaLen
+gi|228288719|ref|NC_012624.1|                                ISH3             1    2.93            1238           42245
+input                                                        total            1    2.93            1238           42245
diff -r 000000000000 -r debe9c750cdd test-data/test_2.fna.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_2.fna.tsv	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,2 @@
+seqID	family	cluster	isBegin	isEnd	isLen	ncopy4is	start1	end1	start2	end2	score	irId	irLen	nGaps	orfBegin	orfEnd	strand	orfLen	E-value	E-value4copy	type	ov	tir
+gi|228288719|ref|NC_012624.1|	ISH3	ISH3_198|ISH3||gi|15898236|ref|NP_342841	32413	33650	1238	1	32413	32456	33607	33650	48	34	44	0	32517	33587	-	1071	2.3e-147	2.3e-147	c	1	CCCTTATTCGGTAGACCCAAAATCACCTCCTTGAAAATAAATCT:CCCTAATACGGTAGACCCAAAATCGTATTATGAAAAATAATTCT
diff -r 000000000000 -r debe9c750cdd test-data/test_2.log
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_2.log	Thu Sep 01 09:29:56 2022 +0000
@@ -0,0 +1,43 @@
+/usr/local/bin/FragGeneScan -s input -o results/proteome/input -w 0 -t illumina_5 -p 1
+Using 1 threads.
+no. of seqs: 1
+Clock time used (by 1 threads) = 0.00 mins
+prepare gff file..
+Time elapsed: 0 hours 0 minutes and 0 seconds.
+ISEScan starts at Wed Aug 31 15:19:29 2022
+predict and translate genes from genome sequence into protein database using FragGeneScan program
+
+Begin to translate genome into proteome.
+Translating genome into proteome for input , return  0
+
+Finish translating genome into proteome. Wed Aug 31 15:19:29 2022
+
+Begin to phmmer search against proteome database. Wed Aug 31 15:19:29 2022
+Finish phmmer searching /usr/local/bin/pHMMs/clusters.single.faa  against results/proteome/input.faa , output results/hmm/clusters.single.faa.input.faa
+
+Finish phmmer searching against proteome database. Wed Aug 31 15:19:48 2022
+
+Begin to profile HMM search against proteome database. Wed Aug 31 15:19:48 2022
+Finish Profile HMM searching /usr/local/bin/pHMMs/clusters.faa.hmm  against results/proteome/input.faa , output results/hmm/clusters.faa.hmm.input.faa
+
+Finish profile HMM searching against proteome database. Wed Aug 31 15:20:01 2022
+pred begins at Wed Aug 31 15:20:01 2022
+Begin addNonORFcopy at Wed Aug 31 15:20:01 2022
+Finish addNonORFcopy at Wed Aug 31 15:20:01 2022
+Begin addNonORFcopy1 at Wed Aug 31 15:20:01 2022
+Finish addNonORFcopy1 at Wed Aug 31 15:20:01 2022
+getFullIS() begins at Wed Aug 31 15:20:01 2022
+Start removing partial IS elements
+Remove single-copy partial IS element with evalue > 1e-50: isLen=989 IS5 bd=[30355, 31343] orf('gi|228288719|ref|NC_012624.1|', 30399, 31298, '+') evalue=1.7e-37
+Finish removing partial IS elements
+Begin removeOverlappedHits at Wed Aug 31 15:20:01 2022
+gi|228288719|ref|NC_012624.1|: no intersected hits found
+Finish removeOverlappedHits at Wed Aug 31 15:20:01 2022
+Begin reading protein database at Wed Aug 31 15:20:01 2022
+Finish reading protein database at Wed Aug 31 15:20:01 2022
+Write IS elements from all sequences in input into one result file under results
+Write 1 IS copies to results/input.csv and results/input.tsv and results/input.raw
+Write summarized result to results/input.sum
+End in pred Wed Aug 31 15:20:01 2022
+Only complete IS elements are reported.
+ISEScan ends at Wed Aug 31 15:20:01 2022