Mercurial > repos > iuc > isoformswitchanalyzer
comparison IsoformSwitchAnalyzeR.R @ 4:512d6462f2ce draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/isoformswitchanalyzer commit fa9a0a8f71ce6da2cd790474454776a9601968c3
| author | iuc |
|---|---|
| date | Tue, 30 May 2023 08:39:23 +0000 |
| parents | 02a77166b29a |
| children | b3f292d9f35d |
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| 3:02a77166b29a | 4:512d6462f2ce |
|---|---|
| 891 sep = "\t", | 891 sep = "\t", |
| 892 col.names = TRUE, | 892 col.names = TRUE, |
| 893 row.names = FALSE | 893 row.names = FALSE |
| 894 ) | 894 ) |
| 895 | 895 |
| 896 write.table( | |
| 897 SwitchList$switchConsequence, | |
| 898 file = "switchConsequence_fulldata.tsv", | |
| 899 quote = FALSE, | |
| 900 sep = "\t", | |
| 901 col.names = TRUE, | |
| 902 row.names = FALSE | |
| 903 ) | |
| 904 | |
| 905 write.table( | |
| 906 SwitchList$AlternativeSplicingAnalysis, | |
| 907 file = "switchSplicing_fulldata.tsv", | |
| 908 quote = FALSE, | |
| 909 sep = "\t", | |
| 910 col.names = TRUE, | |
| 911 row.names = FALSE | |
| 912 ) | |
| 913 | |
| 914 write.table( | |
| 915 SwitchList$isoformFeatures, | |
| 916 file = "IsoformFeatures.tsv", | |
| 917 quote = FALSE, | |
| 918 sep = "\t", | |
| 919 col.names = TRUE, | |
| 920 row.names = FALSE | |
| 921 ) | |
| 896 | 922 |
| 897 ### Volcano like plot: | 923 ### Volcano like plot: |
| 898 outputFile <- file.path(getwd(), "volcanoPlot.pdf") | 924 outputFile <- file.path(getwd(), "volcanoPlot.pdf") |
| 899 | 925 |
| 900 pdf( | 926 pdf( |