Mercurial > repos > iuc > isoformswitchanalyzer
diff test-data/test02_counts.tabular @ 5:b3f292d9f35d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/isoformswitchanalyzer commit 7b7d9892618706dad95641831db8b9f83deb86e1
| author | iuc |
|---|---|
| date | Fri, 02 Jun 2023 10:27:16 +0000 |
| parents | f3fefb6d8254 |
| children |
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--- a/test-data/test02_counts.tabular Tue May 30 08:39:23 2023 +0000 +++ b/test-data/test02_counts.tabular Fri Jun 02 10:27:16 2023 +0000 @@ -1,355 +1,355 @@ -gene_names cancer0 cancer1 health0 health1 -AADACL3 1.33294716142329 1.60935135697703 0 0 -AADACL4 0.16565689184278 0.245447543814652 0 0 -ACAP3 66.9545762637869 99.4728681831285 1393.95324090613 1183.58827790662 -ACOT7 455.514031889104 625.643253171647 7395.10823740127 2889.86502433136 -ACTL8 2.25786678564214 2.8385206089638 6.29646468356414 9.65386190076367 -AGMAT 14.1868697001226 20.8082199337387 56.2113078807145 41.8419006164206 -AGRN 223.424831149421 331.946548429751 2144.12485688125 3783.10646304681 -AGTRAP 187.400533886563 314.973593315019 1943.78534029914 2390.03265356525 -AJAP1 8.63047529957261 13.8464275492248 2.78718070452411 0 -AKR7A2 83.7117317539189 130.289924823431 3829.83857542184 3540.61290523654 -AKR7A3 1.86761600752251 3.58107135446447 19.1848890894377 15.2519579815619 -AKR7L 1.63323529019925 1.78518588259504 12.0382831872031 11.9429611381668 -ALDH4A1 80.0692491307954 115.615849240505 588.92974612004 641.316225550933 -ALPL 598.739713486774 931.026396105693 12.5179727486086 145.603586056744 -ANGPTL7 0.111187468282468 0.164742599508691 11.7533214949055 12.3890347339164 -APITD1 27.9435627190935 40.1067500091512 802.720467188703 663.18564778364 -ARHGEF10L 80.3813346280653 125.687632167421 575.337403596391 982.752730025466 -ARHGEF16 44.2754028984311 66.8497008399258 8.93761413278206 2.14380019716824 -ARHGEF19 115.733727841445 189.932215231752 192.61472131494 216.922297485954 -ASAP3 88.368604104536 144.185270660234 977.339687032257 832.468754427446 -ATAD3A 170.332210340393 256.909438164756 2909.59238880021 1787.85567999184 -ATAD3B 115.009269719842 186.922563175749 1204.49289913673 580.698972738788 -ATAD3C 9.18645892844685 11.1689876678097 20.3511517744843 14.9657017546822 -ATP13A2 173.079288123976 259.826155166127 778.918736405516 778.83424421371 -AURKAIP1 431.089374951588 734.107961651523 9367.79479097331 6368.53564372911 -B3GALT6 34.5537089926203 48.0941285791035 1107.4652590036 1344.53791709811 -C1orf126 0.748005384270891 2.19315673139357 0 2.02937495588995 -C1orf127 0.219649529265469 1.31728558966594 0.73417113252224 0 -C1orf128 157.021218105179 205.564314627884 2055.87258399552 1840.70695418312 -C1orf130 0.270304535188066 0.445000989755816 0 0.293709236838892 -C1orf144 169.905131358614 236.936379177537 6169.84439356059 6172.79967616817 -C1orf151 81.934540083501 106.83864564802 2316.80019551674 1742.26068228731 -C1orf158 0.306319741118665 0 0 0 -C1orf159 25.4472609092091 27.0936925692478 255.003897423656 260.387760636754 -C1orf167 0.852445327466635 1.62734609336196 4.28017084616318 20.8037404760945 -C1orf170 1.12825925747856 4.0128035997215 42.2830759803238 44.6208842491559 -C1orf174 65.3123327213875 103.529715471474 1150.25066664382 1553.57631620601 -C1orf187 38.4882619397459 66.6560127067159 22.7498270005338 2.90670998197146 -C1orf200 0.140010077377323 0 0 0 -C1orf201 16.9572193953188 29.7070533850009 301.219367711266 379.623514344136 -C1orf211 14.6209036697657 26.998386277083 1.41183164282385 8.65855898698444 -C1orf213 0.518508587606857 1.88619698952573 76.5600381962453 156.763728464001 -C1orf222 0.381237303744296 0.529475492302115 0 0 -C1orf70 7.51184976845881 19.8485556995299 239.879629899723 290.034472160915 -C1orf86 225.001393970245 375.819392770559 3491.25500640192 2865.04772849532 -C1orf89 5.10917443855593 12.0376749429161 202.484599015937 212.283237977287 -C1orf93 100.534745697611 160.074553609957 1576.8889615254 1358.37868843451 -CAD 1.78359239559776 5.00082342629287 0 13.4392425305562 -CALML6 2.92860771428337 5.65982936080012 0 2.10905502038753 -CAMK2N1 14.2906082102419 26.1322888570167 8126.76185609601 16305.1258047596 -CAMTA1 200.588720737929 253.543060947236 3055.15380157953 4100.09091814611 -CAPZB 619.112320909139 991.572432852428 20316.4731362545 24041.0162369706 -CASP9 51.1870965570691 80.3510692413285 340.999216471908 304.57891159937 -CASZ1 13.6330268070182 19.042062635585 8.81866733613576 9.75816312925625 -CCDC27 0.0573867205178809 1.02033468450467 0.75773394235314 0 -CCNL2 154.506479643163 214.761548556505 1152.06879708577 1771.98482377448 -CDA 13.5485774691298 33.1982874601624 176.302023749904 350.510461917004 -CDC2L1 290.944540530384 454.207969292801 3112.41609597224 1859.4524654607 -CDC2L2 170.977132360159 246.928776496558 2067.4280282674 2282.26157605437 -CDC42 203.801007690173 285.200666437615 11564.694795414 10973.3271896535 -CELA2B 0.159866211673547 0.236811104138174 0 0 -CHD5 3.05969618009437 5.29226916471859 5.15789578430315 4.14182197419077 -CLCN6 47.6704636085561 60.4197458667943 574.076737032054 768.141520213874 -CLCNKA 2.63522828591018 8.68236787500691 0.678927560712282 0 -CLCNKB 5.15929663864343 12.8715185272746 2.32675789513133 1.78445080716628 -CLSTN1 202.476075380806 319.632083851152 5093.23897792429 6042.3182160338 -CORT 2.88722197591461 5.85418514894763 8.23077012212674 22.4610665654388 -CPSF3L 295.347158226512 486.168636281702 3790.65155484617 3288.19390910512 -CROCC 78.3541158913447 107.947902278446 165.209683502876 225.026477190003 -CTNNBIP1 77.4633730300185 121.027354039037 541.243734816617 627.657026575342 -CTRC 0 0 2.62147985845083 10.0482914559178 -Cort 1.39537707894365 1.30434109573608 5.2816642560574 0.0151412578013478 -DDI2 32.8160456278053 49.5573033486735 254.874844668067 460.575319357691 -DDOST 604.449663575025 907.98657543851 13665.5007422144 15397.9137626485 -DFFA 130.006170003179 214.639755373536 1325.04655393129 1333.60627430197 -DFFB 13.2342440141516 16.2498596905303 127.460095995143 151.574760997069 -DHRS3 87.0464324268709 116.72890181231 1019.4715318943 889.744275630948 -DNAJC11 170.344114526107 239.921012121094 2130.43084610145 1817.86818341584 -DNAJC16 19.7622965555186 25.9568339296646 344.527403240069 532.271145389955 -DVL1 134.516467764835 206.683713511138 2152.3813715147 1328.47243311826 -DVL1L1 3.31326839123532 6.78391259724545 59.8262158993051 60.6810257420504 -E2F2 10.4399946081232 18.7092348544285 97.2088092893749 35.6406449776233 -ECE1 66.4571391530656 104.799250566661 6832.6483396322 8161.51962989564 -EFHD2 53.7957629609978 89.4533777139045 2778.28294353325 2216.78314141543 -EIF4G3 88.0324265767771 124.576532306832 2013.10224443396 2895.59135213179 -ENO1 6558.87666660173 9380.2303936004 93534.3399845077 69650.8820586366 -EPHA2 77.3221844026497 91.3520663119398 1390.10455203221 695.561720381493 -EPHA8 7.41680618002836 20.4553678887687 0 0 -EPHB2 32.3112950981041 60.4351378257855 1707.12636087386 423.970018570528 -ERRFI1 61.8103776457282 74.6154646346554 2062.3064004349 3271.74502949025 -ESPN 19.6610267100338 39.4634680663325 0.451453505296478 0 -ESPNP 0.129073180931436 1.10615167601148 0 0 -EXOSC10 173.284597941512 227.633522955699 1944.55712530741 1802.75580392237 -FAM131C 2.24876951909219 6.27872574545493 58.9032768191879 46.1727202863332 -FAM132A 3.84947896587315 9.98135157830029 128.448491513426 40.4669321823919 -FAM41C 0.302278489637574 0.335905814000472 4.95347952144023 12.1516309778703 -FAM43B 5.46152884081911 6.47372226696996 2.51816321877196 0.965224952857359 -FBLIM1 111.14573835528 181.165870005859 1673.86297734934 4009.68470407822 -FBXO2 154.152795959943 320.494643776912 53.5029060412522 114.375666849763 -FBXO42 32.5697215584544 48.16155042074 573.623814141438 758.468180724696 -FBXO44 66.872920433567 104.857828313577 440.70354833884 534.287933783485 -FBXO6 3.50735527954742 4.06973374654982 375.388875588851 452.825103479876 -FHAD1 0.921397741797418 1.65506633667102 3.92992882180617 4.53163220334661 -FUCA1 17.0659023558552 22.5859660704193 173.703225947981 150.186453191324 -GABRD 4.99857114177978 7.69856396630753 0.865565912204043 0 -GALE 66.7029801712116 108.438476102006 1069.52511368286 649.188753095255 -GLTPD1 23.9392818646217 32.0156695513129 930.45330751506 848.58426405939 -GNB1 552.837447538731 914.810470156843 17713.2729458483 20611.8841648059 -GPR153 29.2904210431041 54.7774980860172 1159.24045408154 570.753283504249 -GPR157 6.9246933142833 13.2614200369664 130.905914635676 92.9695489365082 -GRHL3 3.17376836133494 4.12271726299763 0.648123796243081 0.993719066619065 -H6PD 9.73184391540445 18.8086651865309 1098.37928461226 1470.23075215424 -HES2 0.860500532694876 1.72024884210958 2.59604614402101 1.53614188010627 -HES3 187.003719783718 265.680001103292 0 0 -HES4 3.26807877298495 9.21672514534727 11.5504692743939 65.2732181635511 -HES5 0.413503700004359 0.45950633170621 0 0 -HMGCL 39.2773527873122 73.3597815846527 1688.82684523087 2363.0312070757 -HNRNPR 358.051830999552 557.471771442898 6385.71855992608 5229.07227596313 -HP1BP3 139.453393502231 177.816028016673 4186.94412612279 6078.47421848083 -HSPB7 0.394310461505414 2.0187516214347 948.162427438671 726.090182906317 -HSPG2 121.689737329714 194.674360059929 2789.41615140344 9015.0255999021 -HTR1D 13.8118225729494 29.5527048447396 0 0 -HTR6 2.35343259159145 4.61791075618961 0 0 -ICMT 166.884696441074 229.758550167118 2794.81710553285 3198.04879103838 -ID3 449.723045510507 491.937275449614 1856.58321013501 1565.24977053587 -IFFO2 11.1211442814015 15.5015656767494 254.481027389179 450.177925257366 -IGSF21 48.2382101870424 74.0827603487169 0 0 -IL22RA1 0.705781326914609 1.48216703986439 5.34585936395826 2.75585835305596 -IL28RA 26.6775412932847 37.2044611745628 0 0.262706833151213 -ISG15 119.116629191387 201.703582003596 3105.38902825296 4422.52033006602 -KCNAB2 14.472866871752 26.0071232987046 98.0568372347768 139.265892445833 -KIAA0090 75.0221900923905 106.982092747177 2619.54097689511 2814.94479083254 -KIAA0495 53.1784425108188 75.9934182768027 301.178753240637 296.492504087296 -KIAA0562 23.4536077035124 30.4155950084256 552.955561310365 757.122210924832 -KIAA1751 0.124854649064705 0.147995553518561 0 0 -KIAA2013 87.6070922762549 142.540272990766 2235.34892030079 1016.20334845621 -KIF17 15.2331384334259 40.1105728721002 62.825982814168 237.073941704818 -KIF1B 78.4463774846293 111.037884709977 958.82950446031 1462.83998698116 -KLHDC7A 29.4976583180273 34.0128833944181 0 1.70197917290678 -KLHL17 88.4149865150737 139.743229547414 402.664189240798 385.634425836106 -KLHL21 45.7081683780084 64.1115115382759 1140.79410997292 1285.06857702427 -LDLRAD2 3.59538453721335 6.68521812139144 76.1340375265393 338.51369086515 -LRRC38 0.997683514322432 1.47823110632106 0 0 -LRRC47 167.727959048214 235.517074003772 1609.60980616476 1612.38422270307 -LUZP1 54.5077436444742 74.5740215696991 793.059726494864 1259.65975718178 -LYPLA2 339.908534559412 474.507682586206 1769.12671671444 899.71679762656 -LZIC 24.5909618538249 35.5038220040877 1005.55759760837 1328.64742363139 -MAD2L2 797.802503952905 1305.4448801087 3002.54966649886 2339.60499136296 -MASP2 6.94294362970907 10.4836075684965 17.3641720890563 16.8953743526098 -MEGF6 24.9133362230742 41.5314394969293 107.890965396316 259.377741818583 -MFAP2 570.353630763356 951.524946192844 4072.22816859979 1290.37024329098 -MFN2 109.138239264186 175.569198648429 3384.37411958815 3187.33975186549 -MIB2 72.1921445934075 105.877740006373 548.104608562341 842.319837122101 -MIIP 152.156382122545 219.249266599866 749.357895700436 551.454150999317 -MMEL1 1.35218731641887 2.59812893600714 1.9457853553284 6.10731690978305 -MMP23B 7.44397573330445 13.7807209705557 42.2011921224724 16.2670454373069 -MORN1 12.1189773398316 22.5921149570219 117.104726780606 115.439591842647 -MRPL20 575.672594221529 786.216186065711 10475.7619523782 9030.95571681375 -MRTO4 115.820605846853 175.534021130212 2266.6396732955 1473.2148439687 -MST1 11.436606389674 26.2428762056621 18.1752386648597 15.1154146036243 -MSTP9 4.88016781424482 7.61152114597714 3.65209942678968 3.55005851843959 -MTHFR 24.4475063276812 29.9700789192959 582.652443982103 920.313167786806 -MTOR 124.73936895399 181.787722378907 941.518274269282 910.65217053747 -MUL1 43.3272006808776 62.561780331408 1786.27725008401 1654.45029118442 -MXRA8 17.1568275470348 30.24735314324 16870.3622806594 15899.5507870047 -MYOM3 0.310421878415021 0.976053727109405 0 0 -NADK 147.791664362847 198.074254201433 1436.260234407 1430.74198842295 -NBL1 20.0871324682544 36.2462919848782 15872.8448293203 8582.52849084122 -NBPF1 51.5703448730042 58.6048802693097 1706.92782325294 2229.62017496562 -NBPF3 7.68495419423518 9.85151423019643 363.760809561629 869.632664928996 -NECAP2 65.7636829492125 96.2138649556517 3701.02434454676 5026.27670642801 -NIPAL3 18.8632148299027 24.5281240302511 1308.81945494026 2494.67782270471 -NMNAT1 4.78702557232616 7.04611074195382 314.687302277864 420.645042396772 -NOC2L 234.728893985379 312.96361094634 3237.14842462 1785.16903474856 -NOL9 25.584267048995 30.1478510202841 399.044328237984 433.83104623246 -NPHP4 25.0160670907537 31.4174022684124 132.796837435761 130.998815020073 -NPPA 0.710192088474257 2.89406878186218 13.429851621239 27.4507568623061 -NPPB 0.705955005423599 1.74331524334027 0 0 -OTUD3 19.974820095962 26.6627640369539 85.6445817254726 116.089955401405 -PADI1 0.185516840463236 1.24182414771582 0 1.11316504418009 -PADI2 7.51899928234925 12.2918361015747 0 2.02472269658805 -PADI3 0.869450628853144 3.30460477762227 0 0.728834344112798 -PADI4 0.383826315779788 1.10110298423884 0 0 -PADI6 0 0.0707671159325972 0 0 -PANK4 41.8970367940307 68.1135465099719 638.532122052508 500.8015989744 -PARK7 1077.81774511544 1540.15324809546 24362.6961564898 24307.5268486402 -PAX7 0.21145536824581 0.0816882815741125 0 0 -PDPN 204.703088605948 309.476711243959 165.120606833283 85.5475350277717 -PER3 10.0624111654097 27.5498566921273 236.275948645371 607.667822838314 -PEX10 58.1307855336005 80.7060283478488 1151.06186639986 930.452221357871 -PEX14 73.4945032707565 107.881910331134 1371.46977439048 1094.01402382356 -PGD 890.161300907484 1280.00698110311 19121.666094945 12476.1466550127 -PHF13 77.8551548549547 121.472277853625 742.138646029597 1030.19031622626 -PIK3CD 50.9607746055481 82.4895572377791 183.485391801705 221.213373384644 -PINK1 50.0818469155858 85.5475963290434 2692.36077455866 4317.35515886264 -PLA2G2A 3.74974538819337 7.92256771625009 22.9259041929206 6.51597423568075 -PLA2G2F 0 0.122170264426813 0 0 -PLA2G5 0.201088163638666 0 277.115482877212 55.4248127286894 -PLCH2 0.193540142248261 0.544784065319548 5.22902173840885 0.616837768527375 -PLEKHG5 42.2674777253159 83.4115088410516 107.045403068473 55.8901444256815 -PLEKHM2 93.8608844360673 140.071313747926 2597.10278065526 2783.72448827927 -PLEKHN1 2.5736879406531 4.40844119860827 80.117711730481 53.72785611922 -PLOD1 109.603259722424 181.797773098397 7647.61830726864 16571.3813969054 -PNRC2 143.027070406672 152.609586312322 2011.01065422974 2090.32021814912 -PQLC2 38.0703573702872 61.4706383280928 714.709789866736 633.259418304438 -PRAMEF12 0 0.279456665890625 0 0 -PRAMEF17 0 0.106673490789535 0 0 -PRDM16 0.611027729076883 0.984067740086007 7.62453585986095 11.4951548439442 -PRDM2 18.6581906890874 28.2475997148451 394.131386140751 725.046460696322 -PRKCZ 117.712024291513 181.492407113477 53.2817718056418 161.944015592889 -PTCHD2 9.26750946108815 13.0498685446334 1.20260777463017 0 -PUSL1 94.6023146270327 149.809078960288 1102.09270198373 867.275989488539 -Pex14 13.4164623711511 17.5741837703391 583.441949667253 549.700888764663 -RAP1GAP 20.2795577553702 34.2314656737353 1.93869267311573 2.97246652674793 -RBP7 27.4187934555505 47.5241092022853 22.1452327263775 21.8273080337132 -RCAN3 17.5062860157843 22.073693461388 305.126521225719 626.138147907035 -RCC2 609.224891778857 1055.45297526727 1398.04583673645 985.098041731445 -RER1 95.2926149754708 147.338450580103 4103.2887729276 4944.55939763565 -RERE 124.283460004597 168.245837014558 1692.02943382284 3015.46946770012 -RNF186 0 0.132978736376042 0 0 -RNF207 8.17889719501219 15.6369991218838 54.0689440848903 102.812840504349 -RPL11 9264.50338715238 15259.6279877625 120354.990597382 151466.498386692 -RPL22 548.222657612127 767.825253908004 9672.8039620794 12962.5458958234 -RSC1A1 35.1225700307662 41.556494504802 304.983855853392 560.365515506551 -SAMD11 0.975266140467855 0.759252887568278 45.0300230436727 49.0319495170954 -SCNN1D 7.71336638783454 15.5462142033146 63.1275559900522 82.3917376076902 -SDF4 227.240662691068 321.830494596159 11192.2468917904 9591.92021655629 -SDHB 197.976221969527 275.147419909074 5863.32070994542 6298.70789527058 -SFRS13A 205.264479559859 266.370449636862 2681.6216041 2951.10917707711 -SH2D5 32.9533496689486 61.4520589305865 461.673162743305 234.472126490938 -SKI 92.3897739483106 127.413509412446 1927.52535349287 1842.60449966352 -SLC25A33 24.6601200693325 47.4403292762466 384.468466133855 215.085637104663 -SLC25A34 1.29825648901777 1.62759915612056 13.5765083834194 18.5813260646421 -SLC2A5 0.260483267812907 0.67541240881633 16.3041560887102 277.689332454979 -SLC2A7 0.0850275751047418 0 0 1.50881939106148 -SLC35E2 148.195682693737 196.923064964221 2067.76811117078 1857.68513708358 -SLC45A1 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