Mercurial > repos > iuc > ivar_filtervariants

comparison test-data/zika/Z52_b.tsv @ 0:c88553ec696e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
author iuc
date Mon, 30 Mar 2020 07:18:00 -0400
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comparison
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-1:000000000000 0:c88553ec696e
1 REGION POS REF ALT REF_DP REF_RV REF_QUAL ALT_DP ALT_RV ALT_QUAL ALT_FREQ TOTAL_DP PVAL PASS
2 PRV 685 C T 268 203 36 10 0 37 0.0359712 278 0.000867393 TRUE
3 PRV 1682 C T 1505 1475 37 50 50 37 0.0321543 1555 1.59703e-14 TRUE
4 PRV 1721 A T 27 0 36 1 0 38 0.0357143 28 0.509091 FALSE
5 PRV 1818 A T 31 31 37 1 1 37 0.03125 32 0.507937 FALSE
6 PRV 1848 T C 31 31 36 1 1 36 0.03125 32 0.5 FALSE
7 PRV 1965 T G 469 28 36 71 1 36 0.131481 540 1.31011e-23 TRUE
8 PRV 2781 T G 404 75 37 35 7 36 0.0788288 444 1.12705e-11 TRUE
9 PRV 2922 C T 277 0 36 19 0 34 0.0641892 296 1.46245e-06 TRUE
10 PRV 3148 Y T 0 0 0 1943 271 36 0.740473 2624 0 TRUE
11 PRV 3148 Y C 0 0 0 679 99 37 0.258765 2624 0 TRUE
12 PRV 3295 A G 1806 1806 36 69 69 34 0.0368 1875 2.28815e-20 TRUE
13 PRV 3827 C T 248 0 37 14 0 36 0.0534351 262 5.10688e-05 TRUE
14 PRV 5680 C T 38 5 50 7 1 49 0.155556 45 0.00133612 TRUE
15 PRV 5683 G -A 45 8 53 2 0 20 0.0444444 45 0.159299 FALSE
16 PRV 6301 T G 10 10 37 1 1 24 0.0909091 11 0.52381 FALSE
17 PRV 6374 A -AGAGTGCTCAAACCGAGGTGGATGGACGCC 12 12 37 1 0 20 0.0833333 12 0.52 FALSE
18 PRV 6390 A G 26 12 37 1 0 38 0.037037 27 0.5 FALSE
19 PRV 6439 T A 27 12 36 1 1 38 0.0357143 28 0.509091 FALSE
20 PRV 6479 A T 14 0 36 1 0 37 0.0666667 15 0.517241 FALSE
21 PRV 7916 C T 286 227 36 45 38 37 0.135952 331 4.31473e-15 TRUE
22 PRV 8074 C T 18 2 39 1 0 76 0.0526316 19 0.463415 FALSE
23 PRV 9713 C T 475 0 37 27 0 36 0.0537849 502 4.66646e-09 TRUE
24 PRV 10227 G T 533 528 37 18 18 37 0.0326087 552 2.31457e-06 TRUE