diff test-data/covid19/PC00101P_variants.tsv @ 0:fafb3d685fa9 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
author iuc
date Mon, 30 Mar 2020 06:54:03 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/covid19/PC00101P_variants.tsv	Mon Mar 30 06:54:03 2020 -0400
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+REGION	POS	REF	ALT	REF_DP	REF_RV	REF_QUAL	ALT_DP	ALT_RV	ALT_QUAL	ALT_FREQ	TOTAL_DP	PVAL	PASS
+NC_045512.2	241	C	T	0	0	0	89	89	37	1	89	4.3706e-53	TRUE
+NC_045512.2	693	T	C	15	1	39	1	0	37	0.0625	16	0.516129	FALSE
+NC_045512.2	968	G	T	13	13	38	1	1	39	0.0714286	14	0.518519	FALSE
+NC_045512.2	2661	A	+C	90	20	37	6	0	20	0.0645161	93	0.0163863	FALSE
+NC_045512.2	2880	C	A	23	23	37	1	1	38	0.0416667	24	0.5	FALSE
+NC_045512.2	3037	C	T	0	0	0	71	62	40	1	71	7.05539e-45	TRUE
+NC_045512.2	4432	G	+C	284	0	38	12	0	20	0.041958	286	0.00725964	TRUE
+NC_045512.2	7165	C	T	62	0	37	2	0	38	0.03125	64	0.251969	FALSE
+NC_045512.2	14408	C	T	0	0	0	163	163	38	1	163	1.65662e-97	TRUE
+NC_045512.2	14844	A	G	56	13	37	3	3	27	0.0508475	59	0.118724	FALSE
+NC_045512.2	16501	G	+T	10	0	37	1	0	20	0.1	10	0.55	FALSE
+NC_045512.2	17429	A	G	20	0	38	1	0	39	0.047619	21	0.512195	FALSE
+NC_045512.2	18154	T	G	32	0	38	1	0	20	0.030303	33	0.5	FALSE
+NC_045512.2	18156	T	A	32	0	37	1	0	20	0.030303	33	0.5	FALSE
+NC_045512.2	18162	C	A	32	0	38	1	0	20	0.030303	33	0.5	FALSE
+NC_045512.2	18191	A	G	22	0	37	1	0	39	0.0434783	23	0.5	FALSE
+NC_045512.2	18814	C	T	0	0	0	266	216	39	1	266	4.36601e-162	TRUE
+NC_045512.2	19867	A	+C	100	0	37	5	0	20	0.0490196	102	0.11521	FALSE
+NC_045512.2	20087	G	A	27	0	36	1	0	33	0.0357143	28	0.509091	FALSE
+NC_045512.2	20475	A	G	10	10	38	1	1	38	0.0909091	11	0.52381	FALSE
+NC_045512.2	20842	C	A	19	0	38	1	0	20	0.05	20	0.512821	FALSE
+NC_045512.2	20843	C	A	19	0	37	1	0	20	0.05	20	0.512821	FALSE
+NC_045512.2	20863	C	A	18	0	38	1	0	20	0.0526316	19	0.513514	FALSE
+NC_045512.2	21109	A	G	9	9	38	1	1	39	0.1	10	0.526316	FALSE
+NC_045512.2	21174	A	G	15	15	38	1	1	20	0.0625	16	0.5	FALSE
+NC_045512.2	22692	T	A	30	0	38	1	0	39	0.0322581	31	0.508197	FALSE
+NC_045512.2	23403	A	G	0	0	0	118	0	37	1	118	3.49082e-70	TRUE
+NC_045512.2	24012	T	C	9	9	36	1	1	39	0.1	10	0.526316	FALSE
+NC_045512.2	26834	G	A	23	23	37	1	1	37	0.0416667	24	0.5	FALSE
+NC_045512.2	28424	T	C	23	0	36	1	0	38	0.0416667	24	0.5	FALSE
+NC_045512.2	29377	T	-A	14	13	38	1	0	20	0.0714286	14	0.535714	FALSE
+NC_045512.2	29447	G	T	20	20	37	1	1	20	0.047619	21	0.512195	FALSE
+NC_045512.2	29449	G	T	18	18	36	1	1	20	0.0526316	19	0.487179	FALSE
+NC_045512.2	29547	A	G	27	2	38	1	0	38	0.0357143	28	0.5	FALSE