# HG changeset patch
# User iuc
# Date 1623426084 0
# Node ID 43aac8d29685235550cd8431ad72d2690b4c48b4
# Parent  61507c9d063e091f16b1e643de198e7aae8ec68c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 80ad6146e8852fb04fbdbe7b14ab120eee605e3a"

diff -r 61507c9d063e -r 43aac8d29685 test-data/zika/Z52_a_pass.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/zika/Z52_a_pass.vcf	Fri Jun 11 15:41:24 2021 +0000
@@ -0,0 +1,24 @@
+##fileformat=VCFv4.2
+##source=iVar
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
+##INFO=<ID=REF_DP,Number=1,Type=Integer,Description="Depth of reference base">
+##INFO=<ID=REF_RV,Number=1,Type=Integer,Description="Depth of reference base on reverse reads">
+##INFO=<ID=REF_QUAL,Number=1,Type=Integer,Description="Mean quality of reference base">
+##INFO=<ID=ALT_DP,Number=1,Type=Integer,Description="Depth of alternate base">
+##INFO=<ID=ALT_RV,Number=1,Type=Integer,Description="Deapth of alternate base on reverse reads">
+##INFO=<ID=ALT_QUAL,Number=1,Type=Integer,Description="Mean quality of alternate base">
+##INFO=<ID=AF,Number=1,Type=Float,Description="Frequency of alternate base">
+##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
+##FILTER=<ID=PASS,Description="Result of p-value <= 0.05">
+##FILTER=<ID=FAIL,Description="Result of p-value > 0.05">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
+PRV	1682	.	C	T	.	PASS	DP=1133;REF_DP=1097;REF_RV=984;REF_QUAL=37;ALT_DP=34;ALT_RV=33;ALT_QUAL=37;AF=0.0300088
+PRV	1965	.	T	G	.	PASS	DP=365;REF_DP=302;REF_RV=113;REF_QUAL=37;ALT_DP=63;ALT_RV=25;ALT_QUAL=37;AF=0.172603
+PRV	2781	.	T	G	.	PASS	DP=408;REF_DP=354;REF_RV=70;REF_QUAL=37;ALT_DP=48;ALT_RV=8;ALT_QUAL=36;AF=0.117647
+PRV	2922	.	C	T	.	PASS	DP=275;REF_DP=264;REF_RV=0;REF_QUAL=36;ALT_DP=11;ALT_RV=0;ALT_QUAL=36;AF=0.04
+PRV	3148	.	Y	T	.	PASS	DP=1707;REF_DP=0;REF_RV=0;REF_QUAL=0;ALT_DP=1324;ALT_RV=264;ALT_QUAL=36;AF=0.77563
+PRV	3148	.	Y	C	.	PASS	DP=1707;REF_DP=0;REF_RV=0;REF_QUAL=0;ALT_DP=381;ALT_RV=75;ALT_QUAL=36;AF=0.223199
+PRV	3295	.	A	G	.	PASS	DP=1040;REF_DP=1002;REF_RV=1002;REF_QUAL=35;ALT_DP=38;ALT_RV=38;ALT_QUAL=33;AF=0.0365385
+PRV	5680	.	C	T	.	PASS	DP=35;REF_DP=27;REF_RV=5;REF_QUAL=44;ALT_DP=8;ALT_RV=2;ALT_QUAL=46;AF=0.228571
+PRV	7916	.	C	T	.	PASS	DP=432;REF_DP=351;REF_RV=289;REF_QUAL=36;ALT_DP=81;ALT_RV=78;ALT_QUAL=37;AF=0.1875
+PRV	9713	.	C	T	.	PASS	DP=387;REF_DP=374;REF_RV=0;REF_QUAL=37;ALT_DP=13;ALT_RV=0;ALT_QUAL=35;AF=0.0335917