comparison write_amplicon_info_file.py @ 11:5671e1d3d5ee draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 8ce6fd9aee543d9e62db33a9c95f79d8dc4e6dea
author iuc
date Wed, 13 Jul 2022 15:18:33 +0000
parents c092052ed673
children
comparison
equal deleted inserted replaced
10:9f978da6528a 11:5671e1d3d5ee
8 8
9 9
10 def write_amplicon_info_file(bed_file, amplicon_info_file): 10 def write_amplicon_info_file(bed_file, amplicon_info_file):
11 amplicon_sets = {} 11 amplicon_sets = {}
12 for line in bed_file: 12 for line in bed_file:
13 fields = line.strip().split('\t') 13 line = line.strip()
14 if not line:
15 continue
16 fields = line.split('\t')
14 start = int(fields[1]) 17 start = int(fields[1])
15 name = fields[3] 18 name = fields[3]
16 re_match = AMPLICON_PAT.match(name) 19 re_match = AMPLICON_PAT.match(name)
17 if re_match is None: 20 if re_match is None:
18 raise ValueError( 21 raise ValueError(