comparison write_amplicon_info_file.py @ 11:5671e1d3d5ee draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 8ce6fd9aee543d9e62db33a9c95f79d8dc4e6dea

10:9f978da6528a

def write_amplicon_info_file(bed_file, amplicon_info_file):
    amplicon_sets = {}
    for line in bed_file:
        fields = line.strip().split('\t')
        start = int(fields[1])
        name = fields[3]
        re_match = AMPLICON_PAT.match(name)
        if re_match is None:
            raise ValueError(

11:5671e1d3d5ee

def write_amplicon_info_file(bed_file, amplicon_info_file):
    amplicon_sets = {}
    for line in bed_file:
        line = line.strip()
        if not line:
            continue
        fields = line.split('\t')
        start = int(fields[1])
        name = fields[3]
        re_match = AMPLICON_PAT.match(name)
        if re_match is None:
            raise ValueError(