Mercurial > repos > iuc > ivar_trim
comparison test-data/zika/Z52_a.vcf @ 6:c3f9b8720d37 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 847ec10cd36ea4f3cd4c257d5742f0fb401e364e"
| author | iuc |
|---|---|
| date | Thu, 10 Jun 2021 22:06:54 +0000 |
| parents | |
| children | e3bb03cf207a |
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| 5:cf65217ad61c | 6:c3f9b8720d37 |
|---|---|
| 1 ##fileformat=VCFv4.2 | |
| 2 ##source=iVar | |
| 3 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> | |
| 4 ##INFO=<ID=REF_DP,Number=1,Type=Integer,Description="Depth of reference base"> | |
| 5 ##INFO=<ID=REF_RV,Number=1,Type=Integer,Description="Depth of reference base on reverse reads"> | |
| 6 ##INFO=<ID=REF_QUAL,Number=1,Type=Integer,Description="Mean quality of reference base"> | |
| 7 ##INFO=<ID=ALT_DP,Number=1,Type=Integer,Description="Depth of alternate base"> | |
| 8 ##INFO=<ID=ALT_RV,Number=1,Type=Integer,Description="Deapth of alternate base on reverse reads"> | |
| 9 ##INFO=<ID=ALT_QUAL,Number=1,Type=Integer,Description="Mean quality of alternate base"> | |
| 10 ##INFO=<ID=AF,Number=1,Type=Float,Description="Frequency of alternate base"> | |
| 11 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> | |
| 12 ##FILTER=<ID=PASS,Description="Result of p-value <= 0.05"> | |
| 13 ##FILTER=<ID=FAIL,Description="Result of p-value > 0.05"> | |
| 14 #CHROM POS ID REF ALT QUAL FILTER INFO | |
| 15 PRV 350 . A T . FAIL DP=106;REF_DP=101;REF_RV=101;REF_QUAL=36;ALT_DP=5;ALT_RV=5;ALT_QUAL=35;AF=0.0471698 | |
| 16 PRV 722 . C CA . FAIL DP=282;REF_DP=280;REF_RV=234;REF_QUAL=36;ALT_DP=9;ALT_RV=0;ALT_QUAL=20;AF=0.0319149;INDEL | |
| 17 PRV 1682 . C T . PASS DP=1133;REF_DP=1097;REF_RV=984;REF_QUAL=37;ALT_DP=34;ALT_RV=33;ALT_QUAL=37;AF=0.0300088 | |
| 18 PRV 1965 . T G . PASS DP=365;REF_DP=302;REF_RV=113;REF_QUAL=37;ALT_DP=63;ALT_RV=25;ALT_QUAL=37;AF=0.172603 | |
| 19 PRV 2702 . A G . FAIL DP=32;REF_DP=31;REF_RV=31;REF_QUAL=36;ALT_DP=1;ALT_RV=1;ALT_QUAL=23;AF=0.03125 | |
| 20 PRV 2781 . T G . PASS DP=408;REF_DP=354;REF_RV=70;REF_QUAL=37;ALT_DP=48;ALT_RV=8;ALT_QUAL=36;AF=0.117647 | |
| 21 PRV 2922 . C T . PASS DP=275;REF_DP=264;REF_RV=0;REF_QUAL=36;ALT_DP=11;ALT_RV=0;ALT_QUAL=36;AF=0.04 | |
| 22 PRV 3148 . Y T . PASS DP=1707;REF_DP=0;REF_RV=0;REF_QUAL=0;ALT_DP=1324;ALT_RV=264;ALT_QUAL=36;AF=0.77563 | |
| 23 PRV 3148 . Y C . PASS DP=1707;REF_DP=0;REF_RV=0;REF_QUAL=0;ALT_DP=381;ALT_RV=75;ALT_QUAL=36;AF=0.223199 | |
| 24 PRV 3295 . A G . PASS DP=1040;REF_DP=1002;REF_RV=1002;REF_QUAL=35;ALT_DP=38;ALT_RV=38;ALT_QUAL=33;AF=0.0365385 | |
| 25 PRV 5680 . C T . PASS DP=35;REF_DP=27;REF_RV=5;REF_QUAL=44;ALT_DP=8;ALT_RV=2;ALT_QUAL=46;AF=0.228571 | |
| 26 PRV 5723 . T G . FAIL DP=32;REF_DP=31;REF_RV=31;REF_QUAL=35;ALT_DP=1;ALT_RV=1;ALT_QUAL=21;AF=0.03125 | |
| 27 PRV 6201 . A G . FAIL DP=12;REF_DP=10;REF_RV=0;REF_QUAL=35;ALT_DP=2;ALT_RV=0;ALT_QUAL=38;AF=0.166667 | |
| 28 PRV 6211 . T C . FAIL DP=9;REF_DP=8;REF_RV=0;REF_QUAL=36;ALT_DP=1;ALT_RV=0;ALT_QUAL=35;AF=0.111111 | |
| 29 PRV 7916 . C T . PASS DP=432;REF_DP=351;REF_RV=289;REF_QUAL=36;ALT_DP=81;ALT_RV=78;ALT_QUAL=37;AF=0.1875 | |
| 30 PRV 9713 . C T . PASS DP=387;REF_DP=374;REF_RV=0;REF_QUAL=37;ALT_DP=13;ALT_RV=0;ALT_QUAL=35;AF=0.0335917 |