diff prepare_amplicon_info.py @ 11:5671e1d3d5ee draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 8ce6fd9aee543d9e62db33a9c95f79d8dc4e6dea

--- a/prepare_amplicon_info.py	Sun Mar 20 11:43:34 2022 +0000
+++ b/prepare_amplicon_info.py	Wed Jul 13 15:18:33 2022 +0000
@@ -11,7 +11,10 @@
 primer_starts = {}
 with open(sys.argv[1]) as i:
     for line in i:
-        f = line.strip().split('\t')
+        line = line.strip()
+        if not line:
+            continue
+        f = line.split('\t')
         try:
             if f[5] == '+':
                 primer_starts[f[3]] = int(f[1])
@@ -32,8 +35,11 @@
 with open(sys.argv[2]) as i:
     ret_lines = []
     for line in i:
+        line = line.strip()
+        if not line:
+            continue
         first = last = None
-        for pname in line.strip().split('\t'):
+        for pname in line.split('\t'):
             try:
                 primer_start = primer_starts[pname]
             except KeyError: