Mercurial > repos > iuc > ivar_trim
view sanitize_bed.py @ 10:9f978da6528a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 27f076c829f3b79c170cad55fc19e2f48c8b22ed"
author | iuc |
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date | Sun, 20 Mar 2022 11:43:34 +0000 |
parents | db536ad45f28 |
children | 5671e1d3d5ee |
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#!/usr/bin/env python import sys with open(sys.argv[1]) as i: bed_data = i.readlines() sanitized_data = [] try: for record in bed_data: fields = record.split('\t') sanitized_data.append( '\t'.join(fields[:4] + ['60'] + fields[5:]) ) except IndexError: pass # leave column number issue to getmasked else: with open(sys.argv[1], 'w') as o: o.writelines(sanitized_data)